Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46356 | Soybean | extracellular, plasma membrane | 54.26 | 52.58 |
| KRG98516 | Soybean | extracellular | 53.19 | 51.55 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 50.0 | 44.76 |
| Bra039375.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.94 | 43.4 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 48.94 | 43.4 |
| AT3G13175.1 | Thale cress | extracellular | 46.81 | 41.51 |
| Bra034700.1-P | Field mustard | extracellular | 44.68 | 40.0 |
| CDY23571 | Canola | extracellular | 44.68 | 40.0 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 44.68 | 40.0 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 40.43 | 39.58 |
| KRH11575 | Soybean | plasma membrane | 38.3 | 37.11 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 38.3 | 37.11 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 46.81 | 36.97 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 37.23 | 36.46 |
| CDY24206 | Canola | mitochondrion | 50.0 | 33.57 |
Protein Annotations
| EMBL:ACUP02001289 | EnsemblPlants:KRH73903 | EnsemblPlantsGene:GLYMA_02G299800 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | ProteinID:KRH73903 | ProteinID:KRH73903.1 | TMHMM:TMhelix | UniParc:UPI00023BCB6E | UniProt:I1JJJ3 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:47658228..47658952
Molecular Weight (calculated)
10626.0 Da
IEP (calculated)
6.800
GRAVY (calculated)
0.453
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MEIPEKVVKF RYHFLGAMLF SLVIMAPRFM TLLTYFWPLF LSTALVLALV FFFAKTSPLH SADATSSLHN AGEALLDYVA GHHDLPLDTR HNSD
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
101: SFTKLD
Arabidopsis Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.