CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73773
CDX77962
CDX78905
CDX84933
CDX90677
CDX98596
CDX99411
CDY01565
CDY03907
CDY05723
CDY15722
CDY27605
CDY28989
CDY31990
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13175.1	CDX84933	AT1G27300.1	21798944
AT3G13175.1	CDY03907	AT1G27300.1	21798944
AT3G13175.1	CDY15722	AT1G27300.1	21798944
AT3G13175.1	CDY27605	AT1G27300.1	21798944
AT3G13175.1	CDY05723	AT2G20130.1	21798944
AT3G13175.1	CDY31990	AT2G20130.1	21798944
AT3G13175.1	CDX73773	AT3G50910.1	21798944
AT3G13175.1	CDX77962	AT3G50910.1	21798944
AT3G13175.1	CDX90677	AT3G50910.1	21798944
AT3G13175.1	CDY28989	AT3G50910.1	21798944
AT3G13175.1	CDY67893	AT3G50910.1	21798944
AT3G13175.1	CDX78905	AT4G19030.1	21798944
AT3G13175.1	CDX98596	AT4G19030.1	21798944
AT3G13175.1	CDX99411	AT4G19030.1	21798944
AT3G13175.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68671	Canola	extracellular, plasma membrane, vacuole	75.0	100.0
CDY43365	Canola	extracellular, plasma membrane, vacuole	65.71	86.79
CDY23571	Canola	extracellular	63.57	84.76
CDY44017	Canola	extracellular, plasma membrane, vacuole	62.86	83.81
AT3G13175.1	Thale cress	extracellular	62.86	83.02
KRH73903	Soybean	endoplasmic reticulum, plasma membrane	33.57	50.0
VIT_19s0015g00340.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	36.43	42.86
KRG98516	Soybean	extracellular	29.29	42.27
KRH46356	Soybean	extracellular, plasma membrane	29.29	42.27
CDY34463	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.0	39.77
CDY09698	Canola	nucleus	24.29	18.48
CDY42534	Canola	cytosol	23.57	16.92
CDX90528	Canola	golgi, peroxisome, plastid	24.29	16.75
CDY32240	Canola	cytosol, peroxisome, plasma membrane	25.0	16.13
CDY34462	Canola	nucleus	7.14	10.42
CDY22764	Canola	cytosol	5.71	6.4

Protein Annotations

EnsemblPlants:CDY24206	EnsemblPlantsGene:GSBRNA2T00026307001	GO:A0A078GFR0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34125	ProteinID:CDY24206	ProteinID:CDY24206.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE767C
UniProt:A0A078GFR0	MapMan:35.2	:	:	:	:

Description

BnaC01g37860DBnaC01g37860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFR0]

Coordinates

chrLK032155:+:253124..254428

Molecular Weight (calculated)

15737.2 Da

IEP (calculated)

9.533

GRAVY (calculated)

0.279

Length

140 amino acids

Sequence
(BLAST)

001: MHQIVMAKLR LLSLERKRTS NGAEKNRANK THRSLMEFRE KLLKFKFHII FAFVFSLLTV ALVTYSPGFL TVLSYFWPLF LSTALFLAAV FFFAQTSDLP
101: TSSTISSDGS GVKLAAEGIL DYVVGGQEEE TLLDSFTKLD

Best Arabidopsis Sequence Match ( AT3G13175.1 )
(BLAST)

001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD

Arabidopsis Description

At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.