Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- endoplasmic reticulum 5
- plastid 1
- plasma membrane 4
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034700.1-P | Field mustard | extracellular | 84.91 | 85.71 |
| CDY23571 | Canola | extracellular | 84.91 | 85.71 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 84.91 | 85.71 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 83.02 | 83.81 |
| Bra039375.1-P | Field mustard | extracellular, plasma membrane, vacuole | 78.3 | 78.3 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 78.3 | 78.3 |
| CDY24206 | Canola | mitochondrion | 83.02 | 62.86 |
| KRH73903 | Soybean | endoplasmic reticulum, plasma membrane | 41.51 | 46.81 |
| KRH46356 | Soybean | extracellular, plasma membrane | 39.62 | 43.3 |
| KRG98516 | Soybean | extracellular | 38.68 | 42.27 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 46.23 | 41.18 |
| AT4G16400.1 | Thale cress | cytosol | 28.3 | 13.76 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820507 | ProteinID:AEE75305.1 | EMBL:AF380633 | ArrayExpress:AT3G13175 | EnsemblPlantsGene:AT3G13175 |
| RefSeq:AT3G13175 | TAIR:AT3G13175 | RefSeq:AT3G13175-TAIR-G | EnsemblPlants:AT3G13175.1 | TAIR:AT3G13175.1 | EMBL:AY054123 |
| ProteinID:BAB01409.1 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_566446.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR34125 | UniProt:Q9LK55 | TMHMM:TMhelix | UniParc:UPI00000A56E9 | SEG:seg |
Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
Coordinates
chr3:-:4235075..4235814
Molecular Weight (calculated)
11702.4 Da
IEP (calculated)
4.629
GRAVY (calculated)
0.858
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
101: SFTKLD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.