Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012723.1-P | Field mustard | extracellular | 31.65 | 81.18 |
| Bra038456.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 32.57 | 80.68 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.19 | 77.27 |
| CDY09698 | Canola | nucleus | 55.5 | 65.76 |
| CDY42534 | Canola | cytosol | 58.72 | 65.64 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 64.22 | 64.52 |
| Bra040577.1-P | Field mustard | cytosol | 58.26 | 63.82 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 55.5 | 59.61 |
| VIT_00s0194g00220.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 22.48 | 56.98 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 20.64 | 46.39 |
| KRH11575 | Soybean | plasma membrane | 20.18 | 45.36 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 18.35 | 41.67 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 17.89 | 40.62 |
| PGSC0003DMT400057068 | Potato | extracellular, plasma membrane, vacuole | 16.05 | 30.97 |
| Solyc07g065460.1.1 | Tomato | plasma membrane | 15.6 | 29.82 |
| AT3G13175.1 | Thale cress | extracellular | 13.76 | 28.3 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827334 | ProteinID:AEE83742.1 | ArrayExpress:AT4G16400 | EnsemblPlantsGene:AT4G16400 | RefSeq:AT4G16400 |
| TAIR:AT4G16400 | RefSeq:AT4G16400-TAIR-G | EnsemblPlants:AT4G16400.1 | TAIR:AT4G16400.1 | Unigene:At.72978 | UniProt:F4JLT3 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_193373.3 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR34125 |
| PANTHER:PTHR34125:SF1 | TMHMM:TMhelix | UniParc:UPI00017393F6 | : | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
Coordinates
chr4:+:9260564..9262670
Molecular Weight (calculated)
24858.2 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.127
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.