Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42534 | Canola | cytosol | 86.43 | 88.21 |
| Bra038456.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 37.19 | 84.09 |
| Bra012723.1-P | Field mustard | extracellular | 33.67 | 78.82 |
| AT4G16400.1 | Thale cress | cytosol | 63.82 | 58.26 |
| VIT_00s0194g00220.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 21.61 | 50.0 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 21.61 | 44.33 |
| KRH11575 | Soybean | plasma membrane | 20.6 | 42.27 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 20.1 | 41.67 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 19.6 | 40.62 |
| PGSC0003DMT400057068 | Potato | extracellular, plasma membrane, vacuole | 20.1 | 35.4 |
| Solyc07g065460.1.1 | Tomato | plasma membrane | 19.6 | 34.21 |
| Bra039375.1-P | Field mustard | extracellular, plasma membrane, vacuole | 17.59 | 33.02 |
| Bra034700.1-P | Field mustard | extracellular | 15.58 | 29.52 |
Protein Annotations
| EnsemblPlants:Bra040577.1 | EnsemblPlants:Bra040577.1-P | EnsemblPlantsGene:Bra040577 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | PANTHER:PTHR34125:SF1 | TMHMM:TMhelix | UniParc:UPI000253E6D1 | UniProt:M4FHJ9 | MapMan:35.2 |
Description
AT4G16400 (E=1e-035) | unknown protein
Coordinates
chrScaffold000219:+:45479..46749
Molecular Weight (calculated)
22536.4 Da
IEP (calculated)
9.139
GRAVY (calculated)
-0.325
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCIPTLSC KHGNKVRDVW LDEMATEKTK DQPRETVGKK TGTRRCIKIT LTRKQLEMLL KNAEGVSFKL PETCGSGERR WKPSLQTILE HTVSKEKDLR
101: PYVDQQSQKG KMEIQARLKE YKLHFMVAII MSVLVSALVY AAPRILDILA YFWPLFASTA AFLAVAITFG GFQQFSEEAT GEGIMEYVAG RPDDSHKYD
101: PYVDQQSQKG KMEIQARLKE YKLHFMVAII MSVLVSALVY AAPRILDILA YFWPLFASTA AFLAVAITFG GFQQFSEEAT GEGIMEYVAG RPDDSHKYD
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.