Factsheet for VIT_00s0194g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36587	Soybean	endoplasmic reticulum, extracellular, plasma membrane	60.47	53.61
Bra012723.1-P	Field mustard	extracellular	52.33	52.94
KRH11575	Soybean	plasma membrane	59.3	52.58
Bra038456.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.16	50.0
KRH51184	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.65	48.96
CDY34463	Canola	endoplasmic reticulum, plasma membrane, vacuole	50.0	48.86
KRH01967	Soybean	endoplasmic reticulum, extracellular	52.33	46.88
PGSC0003DMT400057068	Potato	extracellular, plasma membrane, vacuole	50.0	38.05
Solyc07g065460.1.1	Tomato	plasma membrane	47.67	35.96
VIT_19s0015g00340.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	45.35	32.77
CDY09698	Canola	nucleus	52.33	24.46
AT4G16400.1	Thale cress	cytosol	56.98	22.48
CDX90528	Canola	golgi, peroxisome, plastid	52.33	22.17
CDY42534	Canola	cytosol	50.0	22.05
Bra040577.1-P	Field mustard	cytosol	50.0	21.61
CDY32240	Canola	cytosol, peroxisome, plasma membrane	51.16	20.28

Protein Annotations

EntrezGene:100254592	wikigene:100254592	EntrezGene:100855374	wikigene:100855374	MapMan:35.2	ProteinID:CBI25748
ProteinID:CBI25748.3	UniProt:D7T5G5	EMBL:FN595527	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EntrezGene:LOC100254592	wikigene:LOC100254592	EntrezGene:LOC100855374	wikigene:LOC100855374	PANTHER:PTHR34125	PANTHER:PTHR34125:SF1
TMHMM:TMhelix	UniParc:UPI000198618C	ArrayExpress:VIT_00s0194g00220	EnsemblPlantsGene:VIT_00s0194g00220	EnsemblPlants:VIT_00s0194g00220.t01	RefSeq:XP_002269970
RefSeq:XP_002269970.1	RefSeq:XP_003635039	RefSeq:XP_003635039.1	:	:	:

Description

No Description!

Coordinates

chrUn:-:10680884..10681310

Molecular Weight (calculated)

9746.2 Da

IEP (calculated)

5.552

GRAVY (calculated)

0.786

Length

86 amino acids

Sequence
(BLAST)

1: MEIQTKLMQY QYHFIITVVV SIILALLFQV APRFLTILAY FWPLFVSTAV LLMVMIVFGQ LSPPSTEIHG EKTGEGLLDY VAGRPE

Best Arabidopsis Sequence Match ( AT4G16400.1 )
(BLAST)

001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.