Factsheet for VIT_19s0015g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_04s0023g02110.t01
VIT_10s0003g01830.t01
VIT_11s0016g03780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13175.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT3G13175.1	VIT_11s0016g03780.t01	AT2G20130.1	21798944
AT3G13175.1	VIT_04s0023g02110.t01	AT3G50910.1	21798944
AT3G13175.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68671	Canola	extracellular, plasma membrane, vacuole	42.86	48.57
Bra039375.1-P	Field mustard	extracellular, plasma membrane, vacuole	42.02	47.17
CDY43365	Canola	extracellular, plasma membrane, vacuole	42.02	47.17
KRH73903	Soybean	endoplasmic reticulum, plasma membrane	36.97	46.81
AT3G13175.1	Thale cress	extracellular	41.18	46.23
CDY23571	Canola	extracellular	40.34	45.71
KRG98516	Soybean	extracellular	36.97	45.36
KRH46356	Soybean	extracellular, plasma membrane	36.97	45.36
VIT_00s0194g00220.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	32.77	45.35
Bra034700.1-P	Field mustard	extracellular	39.5	44.76
CDY44017	Canola	extracellular, plasma membrane, vacuole	39.5	44.76
CDY24206	Canola	mitochondrion	42.86	36.43

Protein Annotations

EntrezGene:100265302	wikigene:100265302	MapMan:35.2	ProteinID:CCB62001	ProteinID:CCB62001.1	UniProt:F6I546
EMBL:FN596747	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100265302	wikigene:LOC100265302
PFscan:PS51257	PANTHER:PTHR34125	TMHMM:TMhelix	UniParc:UPI00015CB615	ArrayExpress:VIT_19s0015g00340	EnsemblPlantsGene:VIT_19s0015g00340
EnsemblPlants:VIT_19s0015g00340.t01	RefSeq:XP_002266351	RefSeq:XP_002266351.1	RefSeq:XP_003634757	RefSeq:XP_003634757.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:8341129..8341966

Molecular Weight (calculated)

13118.0 Da

IEP (calculated)

3.805

GRAVY (calculated)

0.404

Length

119 amino acids

Sequence
(BLAST)

001: MEISEKLLKF KFPILFAFVL FLLISCLFIL APSFVTIIAY FWPLLLSTAL FLVAVLVFAR TSPPDIDSSV DKAGEGLLDF VAGKPEPQPD LESEPEPEPD
101: PEPELEPEPI PAGESLKSE

Best Arabidopsis Sequence Match ( AT3G13175.1 )
(BLAST)

001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD

Arabidopsis Description

At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.