Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 97.14 | 97.14 |
| AT3G13175.1 | Thale cress | extracellular | 85.71 | 84.91 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 84.76 | 84.76 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 78.1 | 77.36 |
| CDY24206 | Canola | mitochondrion | 84.76 | 63.57 |
| KRH73903 | Soybean | endoplasmic reticulum, plasma membrane | 40.0 | 44.68 |
| VIT_19s0015g00340.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 45.71 | 40.34 |
| KRG98516 | Soybean | extracellular | 35.24 | 38.14 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 31.43 | 37.5 |
| KRH46356 | Soybean | extracellular, plasma membrane | 34.29 | 37.11 |
| CDY42534 | Canola | cytosol | 28.57 | 15.38 |
| CDY09698 | Canola | nucleus | 26.67 | 15.22 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 28.57 | 13.82 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 26.67 | 13.79 |
| CDY34462 | Canola | nucleus | 7.62 | 8.33 |
| CDY22764 | Canola | cytosol | 6.67 | 5.6 |
Protein Annotations
| EnsemblPlants:CDY23571 | EnsemblPlantsGene:GSBRNA2T00023764001 | GO:A0A078GDZ9 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | ProteinID:CDY23571 | ProteinID:CDY23571.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB2C26 |
| UniProt:A0A078GDZ9 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g40230DBnaC05g40230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDZ9]
Coordinates
chrLK032145:-:113885..114202
Molecular Weight (calculated)
11622.1 Da
IEP (calculated)
4.400
GRAVY (calculated)
0.737
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFREKLLKF KLQIVFAFVF SFVTVALVTY SPGFLTVVSY FWPLVLSTAL FLTAVFFFAR TSDLPTSSTL SGDGSGLIVA AEGILDYVVG GQHEETLFDS
101: FTKLD
101: FTKLD
001: MEFREKLLKF KLQIVFAFVL SLLTVALVAY SPGFLTVLSY FWPLFLSTAL FLAAVFFFAR TSDLPVSSTI IPGEGAGLKV AAEGILDYVV GGQHEDILFD
101: SFTKLD
101: SFTKLD
Arabidopsis Description
At3g13171 [Source:UniProtKB/TrEMBL;Acc:Q9LK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.