Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012723.1-P | Field mustard | extracellular | 45.11 | 97.65 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 88.04 | 79.8 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 38.04 | 79.55 |
| CDY42534 | Canola | cytosol | 69.57 | 65.64 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 72.83 | 61.75 |
| AT4G16400.1 | Thale cress | cytosol | 65.76 | 55.5 |
| VIT_00s0194g00220.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 24.46 | 52.33 |
| CDY22764 | Canola | cytosol | 35.33 | 52.0 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 23.37 | 44.33 |
| KRH11575 | Soybean | plasma membrane | 22.83 | 43.3 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 22.28 | 42.71 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 21.2 | 40.62 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 18.48 | 32.08 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 17.93 | 31.43 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 16.3 | 28.57 |
| CDY23571 | Canola | extracellular | 15.22 | 26.67 |
| CDY24206 | Canola | mitochondrion | 18.48 | 24.29 |
| CDY34462 | Canola | nucleus | 7.07 | 13.54 |
Protein Annotations
| EnsemblPlants:CDY09698 | EnsemblPlantsGene:GSBRNA2T00031367001 | GO:A0A078FCD7 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | PANTHER:PTHR34125:SF1 | ProteinID:CDY09698 | ProteinID:CDY09698.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EEEBEA | UniProt:A0A078FCD7 | MapMan:35.2 | : | : | : |
Description
BnaC07g33630DBnaC07g33630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCD7]
Coordinates
chrLK031998:-:495826..497097
Molecular Weight (calculated)
20883.8 Da
IEP (calculated)
10.122
GRAVY (calculated)
-0.082
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIHTLRCKS GKKVRDILLD EKATEKAKNP PRGTRRRIKI ILTRKQLELL LLNSAEGVSS KLPKTYGSCK RKWKPSLQTI VEFLYKFESP CSLQQKMEIQ
101: ARLMEYKFHV MITIIVIVVL SSLVYAAPRI LDILAYFWPL FASTAAFLAM AITSGGFQQL SDEATGEGIM DYVAGRPEDS YKYN
101: ARLMEYKFHV MITIIVIVVL SSLVYAAPRI LDILAYFWPL FASTAAFLAM AITSGGFQQL SDEATGEGIM DYVAGRPEDS YKYN
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.