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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038456.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 38.25 94.32
CDY34463 Canola endoplasmic reticulum, plasma membrane, vacuole 34.56 85.23
CDY09698 Canola nucleus 61.75 72.83
CDY42534 Canola cytosol 61.75 68.72
CDX90528 Canola golgi, peroxisome, plastid 64.06 68.47
AT4G16400.1 Thale cress cytosol 64.52 64.22
CDY22764 Canola cytosol 30.41 52.8
VIT_00s0194g00220.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 20.28 51.16
KRH36587 Soybean endoplasmic reticulum, extracellular, plasma membrane 20.74 46.39
KRH11575 Soybean plasma membrane 20.28 45.36
KRH01967 Soybean endoplasmic reticulum, extracellular 18.43 41.67
KRH51184 Soybean endoplasmic reticulum, extracellular, plasma membrane 18.43 41.67
CDY43365 Canola extracellular, plasma membrane, vacuole 16.13 33.02
CDX68671 Canola extracellular, plasma membrane, vacuole 15.67 32.38
CDY23571 Canola extracellular 13.82 28.57
CDY44017 Canola extracellular, plasma membrane, vacuole 13.82 28.57
CDY34462 Canola nucleus 11.98 27.08
CDY24206 Canola mitochondrion 16.13 25.0
Protein Annotations
EnsemblPlants:CDY32240EnsemblPlantsGene:GSBRNA2T00051680001GO:A0A078H0L6GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34125PANTHER:PTHR34125:SF1ProteinID:CDY32240ProteinID:CDY32240.1SEG:segTMHMM:TMhelix
UniParc:UPI0004EE2691UniProt:A0A078H0L6MapMan:35.2:::
Description
BnaA01g17440DBnaA01g17440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0L6]
Coordinates
chrLK032290:+:209962..212132
Molecular Weight (calculated)
24554.2 Da
IEP (calculated)
9.036
GRAVY (calculated)
0.060
Length
217 amino acids
Sequence
(BLAST)
001: MGNCIHTMRS KHGNLVRDLS LDDASTKKIK ESPQLEVAEQ KTGKRRCVKI ILTRKQLEQL LLKCPEGVSF KLPETYGSCN RKWKPSLQPI VEFSSWILLC
101: KFCIQKKILV ICKQLSYSPS LFLSPHQQVM DIQARLMEYK FHFMVATIVS VVLSSLVYAA PIILDILAYF WPLFASTAAF LAIAITFGGF QQLSDEATGE
201: GIMDYVAGRP DDSHKYN
Best Arabidopsis Sequence Match ( AT4G16400.1 )
(BLAST)
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.