Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42534 | Canola | cytosol | 74.4 | 47.69 |
| CDY09698 | Canola | nucleus | 52.0 | 35.33 |
| CDX90528 | Canola | golgi, peroxisome, plastid | 51.2 | 31.53 |
| CDY32240 | Canola | cytosol, peroxisome, plasma membrane | 52.8 | 30.41 |
| CDY34462 | Canola | nucleus | 12.8 | 16.67 |
| CDX68671 | Canola | extracellular, plasma membrane, vacuole | 6.4 | 7.62 |
| CDY43365 | Canola | extracellular, plasma membrane, vacuole | 6.4 | 7.55 |
| CDY34463 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 4.8 | 6.82 |
| CDY23571 | Canola | extracellular | 5.6 | 6.67 |
| CDY44017 | Canola | extracellular, plasma membrane, vacuole | 5.6 | 6.67 |
| PGSC0003DMT400057068 | Potato | extracellular, plasma membrane, vacuole | 5.6 | 6.19 |
| Solyc07g065460.1.1 | Tomato | plasma membrane | 5.6 | 6.14 |
| CDY24206 | Canola | mitochondrion | 6.4 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY22764 | EnsemblPlantsGene:GSBRNA2T00021088001 | ProteinID:CDY22764 | ProteinID:CDY22764.1 | SEG:seg | UniParc:UPI0004EEF380 |
| UniProt:A0A078GBN9 | MapMan:35.2 | : | : | : | : |
Description
BnaA08g05940DBnaA08g05940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBN9]
Coordinates
chrLK032135:-:476458..477464
Molecular Weight (calculated)
14139.2 Da
IEP (calculated)
10.446
GRAVY (calculated)
-0.484
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCIPTLSC KHGNKVRDVW LDEMATEKTK DQPRETVGKK TGTRRCIKIT LTRKQLEMLL KNAEGVSFKL PETCGSGERR WKPSLQTILE QSQKVHTFDI
101: KTISSLQRFW ASTSLSLSLS LSLSL
101: KTISSLQRFW ASTSLSLSLS LSLSL
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.