Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 7
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065460.1.1 | Tomato | plasma membrane | 96.46 | 95.61 |
| VIT_00s0194g00220.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 38.05 | 50.0 |
| Bra012723.1-P | Field mustard | extracellular | 33.63 | 44.71 |
| Bra038456.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 33.63 | 43.18 |
| KRH51184 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 36.28 | 42.71 |
| KRH36587 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 36.28 | 42.27 |
| KRH11575 | Soybean | plasma membrane | 34.51 | 40.21 |
| KRH01967 | Soybean | endoplasmic reticulum, extracellular | 31.86 | 37.5 |
| Bra040577.1-P | Field mustard | cytosol | 35.4 | 20.1 |
| AT4G16400.1 | Thale cress | cytosol | 30.97 | 16.05 |
| CDY34462 | Canola | nucleus | 5.31 | 6.25 |
| CDY22764 | Canola | cytosol | 6.19 | 5.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057068 | EnsemblPlantsGene:PGSC0003DMG400022174 | EntrezGene:102585696 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34125 | PGSC:PGSC0003DMG400022174 | RefSeq:XP_006346142.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295A626 |
| UniProt:M1C0B6 | MapMan:35.2 | : | : | : | : |
Description
UPA24 [Source:PGSC_GENE;Acc:PGSC0003DMG400022174]
Coordinates
chr7:-:55462603..55463233
Molecular Weight (calculated)
12787.5 Da
IEP (calculated)
4.447
GRAVY (calculated)
0.329
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIQKLLLKF KFHILIASTF SIFIFALIYL APRFLDVVKY FWPLLLSTAL FLVAVVLFGW ISPPVSEISG EKTGEGILEF VAGQPEQLQT HLHDLHEHEG
101: DGEDEEGESS KVE
101: DGEDEEGESS KVE
001: MGNCIHTLLC KHGNKVTDVW SDDEASTEKI KESPQDAAEQ KKTGTRRCIK ITLTRKQLEQ LLQQNPQGVS FQRKWKPSLQ TIVEKILWLL ICKVTALVME
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
101: FLDSTSLHFS PLSLTKFNHK EMEIQAKLME YRFHFMVTIM VSVIVASLVY AAPRILNILA YFWPLFASTA AFLAMAITFG GFQQLSEEAT GERLMDYVAG
201: RPEDSHKNNL RDDIEATT
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G16400]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.