Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036850.1-P | Field mustard | plastid | 96.39 | 96.39 |
| CDX73773 | Canola | cytosol | 86.99 | 87.62 |
| CDX90677 | Canola | nucleus | 76.63 | 77.94 |
| CDY28989 | Canola | nucleus | 75.42 | 74.7 |
| AT3G50910.1 | Thale cress | cytosol | 79.52 | 73.83 |
| CDY67893 | Canola | nucleus | 60.72 | 73.04 |
| CDY18608 | Canola | nucleus | 44.82 | 51.24 |
| Zm00001d020667_P001 | Maize | nucleus | 16.14 | 50.38 |
| KRH08190 | Soybean | nucleus | 48.19 | 45.87 |
| KRH76747 | Soybean | plastid | 46.27 | 44.04 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 50.36 | 41.97 |
| KRH28715 | Soybean | cytosol | 41.2 | 41.71 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 40.72 | 40.62 |
| Solyc02g085000.2.1 | Tomato | nucleus | 45.06 | 40.48 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 38.07 | 40.1 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 39.52 | 40.0 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 43.37 | 37.42 |
| Os02t0704600-01 | Rice | nucleus | 40.24 | 36.62 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 39.76 | 36.5 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 39.28 | 36.3 |
| OQU85551 | Sorghum | cytosol, plastid | 39.52 | 36.2 |
| Zm00001d038964_P001 | Maize | nucleus | 36.87 | 36.0 |
| OQU78405 | Sorghum | nucleus | 36.87 | 35.92 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 39.28 | 35.9 |
| Zm00001d051562_P001 | Maize | plastid | 37.83 | 35.6 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 39.28 | 35.59 |
| Zm00001d017768_P006 | Maize | cytosol | 39.76 | 34.74 |
| KRH69884 | Soybean | nucleus | 45.78 | 26.24 |
Protein Annotations
| EnsemblPlants:CDX77962 | EnsemblPlantsGene:GSBRNA2T00129225001 | GO:A0A078CMK0 | ncoils:Coil | PANTHER:PTHR35490 | ProteinID:CDX77962 |
| ProteinID:CDX77962.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDF923 | MapMan:35.2 | : |
Description
BnaA09g31570D
Coordinates
chrLK031814:+:302279..304314
Molecular Weight (calculated)
46296.7 Da
IEP (calculated)
4.572
GRAVY (calculated)
-0.733
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFSAIALD RMLEPGAAST SPSLHYSKPP LSKLENGTRP QMSPALYATP DAIPLPNSPS SSSFPPSPYI INHKSRGPRL LKSSSEANVA SQQKPLEDEG
101: VTGGADVKVS PRRKSTSFSF PISEATEEDY ANGVYDRQVG DFSFDGKLGN GKLELDNAAN NDLEWENNLP EPFTAKVDKE SESEDFYDPG ESASFTSNTD
201: AGEEGSHRLA TPVGEFYDAW DELSSDSGMQ SSVNNNETEL REIRLSLLME IEKRKQTEEA LERMQTHWQM LREQLAQVGV FVPIDPTTST SNMNLSEELR
301: CQLEVARFVS DSLGRGMAKA EVEMEMEAML ETKNFEITRL SDRVHYYEAV NREMSQRNQE AIEVARRERQ KRKKRQRWIW GSIATTITLG SAALAWSYIP
401: ASRPSSEASQ TLKDD
101: VTGGADVKVS PRRKSTSFSF PISEATEEDY ANGVYDRQVG DFSFDGKLGN GKLELDNAAN NDLEWENNLP EPFTAKVDKE SESEDFYDPG ESASFTSNTD
201: AGEEGSHRLA TPVGEFYDAW DELSSDSGMQ SSVNNNETEL REIRLSLLME IEKRKQTEEA LERMQTHWQM LREQLAQVGV FVPIDPTTST SNMNLSEELR
301: CQLEVARFVS DSLGRGMAKA EVEMEMEAML ETKNFEITRL SDRVHYYEAV NREMSQRNQE AIEVARRERQ KRKKRQRWIW GSIATTITLG SAALAWSYIP
401: ASRPSSEASQ TLKDD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.