Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11339 | Canola | cytosol, plastid | 93.84 | 94.12 |
| CDX70131 | Canola | cytosol | 16.72 | 89.06 |
| CDY14956 | Canola | cytosol | 26.1 | 80.18 |
| AT5G05760.1 | Thale cress | cytosol | 74.49 | 75.6 |
| KRH73168 | Soybean | cytosol | 65.1 | 66.27 |
| KRH15025 | Soybean | cytosol | 63.05 | 64.56 |
| PGSC0003DMT400047329 | Potato | cytosol, plastid | 59.53 | 60.6 |
| KRH14969 | Soybean | cytosol | 41.35 | 58.26 |
| Solyc07g054140.2.1 | Tomato | cytosol, plastid | 53.96 | 57.86 |
| VIT_13s0067g00280.t01 | Wine grape | plastid | 62.76 | 54.18 |
| CDX94818 | Canola | cytosol | 46.33 | 46.88 |
| CDY47175 | Canola | cytosol | 45.45 | 45.32 |
| CDY67342 | Canola | cytosol | 44.87 | 44.87 |
| CDX77428 | Canola | cytosol | 44.87 | 44.48 |
| CDX93010 | Canola | cytosol | 45.45 | 43.91 |
| CDY66440 | Canola | cytosol | 45.16 | 43.02 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.3 | GO:A0A078CW42 | EnsemblPlants:CDX80972 | ProteinID:CDX80972 | ProteinID:CDX80972.1 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00134396001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF11416 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF117 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin-5_N | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EAE1A5 | SEG:seg |
Description
BnaC03g02260D
Coordinates
chrLK031823:-:1078798..1080961
Molecular Weight (calculated)
37700.9 Da
IEP (calculated)
9.445
GRAVY (calculated)
-0.386
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTFRDRTA EFHSLSQTLK KIGAAIPSVH QAESDPTSSK RSSPPGSSRS EFNKKASQIG LRIHETSQKT ARLSKLAKES SIFNDRTLEI QELTVLIRND
101: ITGLNMALSD LQTLQNMEIA DGSYSHDKVG HYTAVCDDLK TRLMGATKQF QDVLTARSEN MKAHENRKQL FSAKNAAVDN QNHAKAVPEP PPWSSSSTPS
201: GSLQQQPLLP PVNSGAPSGS QLRRRSAIEN APSQQMEMSM LQQTVPRQEN YSQNRAVALH SVESTITELS GIFTHLATMV TQQGELAIRI DDNMDESLVN
301: VEGARSALLQ HLTRISSNRW LMIKIFAVII LFLIVFLFFV A
101: ITGLNMALSD LQTLQNMEIA DGSYSHDKVG HYTAVCDDLK TRLMGATKQF QDVLTARSEN MKAHENRKQL FSAKNAAVDN QNHAKAVPEP PPWSSSSTPS
201: GSLQQQPLLP PVNSGAPSGS QLRRRSAIEN APSQQMEMSM LQQTVPRQEN YSQNRAVALH SVESTITELS GIFTHLATMV TQQGELAIRI DDNMDESLVN
301: VEGARSALLQ HLTRISSNRW LMIKIFAVII LFLIVFLFFV A
001: MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
Arabidopsis Description
SYP31Syntaxin-31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFK1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.