Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040207.1-P | Field mustard | mitochondrion | 98.63 | 98.63 |
| CDY42912 | Canola | cytosol, mitochondrion | 98.63 | 98.63 |
| CDY21134 | Canola | cytosol, mitochondrion | 97.95 | 97.95 |
| CDX70812 | Canola | cytosol | 97.26 | 97.26 |
| CDY51232 | Canola | cytosol | 97.26 | 97.26 |
| CDY29988 | Canola | cytosol | 96.58 | 96.58 |
| CDY70652 | Canola | extracellular | 95.21 | 95.21 |
| CDX92061 | Canola | cytosol | 93.84 | 93.84 |
| CDY61186 | Canola | cytosol | 76.71 | 93.33 |
| CDY25423 | Canola | cytosol | 93.15 | 93.15 |
| AT5G18380.1 | Thale cress | cytosol | 90.41 | 90.41 |
| AT2G09990.1 | Thale cress | cytosol | 89.73 | 89.73 |
| AT3G04230.1 | Thale cress | cytosol, mitochondrion, plastid | 87.67 | 87.67 |
| CDY24915 | Canola | cytosol | 86.3 | 85.71 |
| Solyc04g026100.1.1 | Tomato | nucleus | 85.62 | 85.03 |
| PGSC0003DMT400077257 | Potato | cytosol | 85.62 | 85.03 |
| GSMUA_Achr6P10560_001 | Banana | cytosol | 56.16 | 84.54 |
| VIT_05s0020g02990.t01 | Wine grape | cytosol | 82.88 | 84.03 |
| Solyc05g005690.1.1 | Tomato | nucleus | 84.25 | 83.67 |
| PGSC0003DMT400010554 | Potato | cytosol | 84.25 | 83.67 |
| VIT_03s0063g00130.t01 | Wine grape | cytosol | 82.19 | 83.33 |
| GSMUA_Achr3P21350_001 | Banana | cytosol | 54.11 | 82.29 |
| Solyc01g068530.2.1 | Tomato | nucleus | 84.25 | 82.0 |
| GSMUA_Achr7P11640_001 | Banana | cytosol | 50.0 | 78.49 |
| KRH70668 | Soybean | nucleus | 82.88 | 77.56 |
| KRH50326 | Soybean | cytosol | 82.88 | 77.56 |
| KRH60450 | Soybean | nucleus | 82.88 | 77.07 |
| GSMUA_Achr3P01630_001 | Banana | cytosol | 52.74 | 77.0 |
| KRH41748 | Soybean | nucleus | 81.51 | 76.77 |
| Os11t0127900-01 | Rice | plastid | 74.66 | 73.15 |
| Os12t0124200-01 | Rice | plastid | 74.66 | 73.15 |
| GSMUA_Achr1P21580_001 | Banana | cytosol | 50.0 | 73.0 |
| TraesCS4A01G323600.1 | Wheat | mitochondrion | 73.29 | 71.33 |
| TraesCS5B01G554700.1 | Wheat | cytosol | 64.38 | 70.68 |
| TraesCS4A01G190200.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS5B01G141700.1 | Wheat | golgi, unclear | 71.92 | 70.47 |
| TraesCS5A01G142900.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4D01G123000.1 | Wheat | golgi, nucleus, unclear | 71.92 | 70.47 |
| TraesCS4D01G122900.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4B01G129600.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4B01G129400.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4A01G190500.1 | Wheat | plastid | 71.92 | 70.47 |
| EES15592 | Sorghum | mitochondrion | 71.92 | 70.47 |
| TraesCS5D01G149100.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| HORVU4Hr1G023530.1 | Barley | mitochondrion, plastid | 71.92 | 70.47 |
| EES09177 | Sorghum | mitochondrion | 71.23 | 70.27 |
| Zm00001d044664_P001 | Maize | plastid | 71.23 | 69.8 |
| Zm00001d023293_P001 | Maize | plasma membrane | 71.23 | 69.8 |
| Zm00001d005023_P001 | Maize | plasma membrane, plastid | 69.86 | 68.92 |
| GSMUA_Achr2P22080_001 | Banana | cytosol | 51.37 | 68.18 |
| CDY25446 | Canola | plastid | 44.52 | 66.33 |
| HORVU5Hr1G045620.1 | Barley | plastid | 71.92 | 58.99 |
| HORVU4Hr1G023570.2 | Barley | mitochondrion | 71.92 | 53.03 |
| VIT_18s0001g14620.t01 | Wine grape | cytosol | 55.48 | 51.59 |
| CDY53247 | Canola | mitochondrion | 39.04 | 37.75 |
Protein Annotations
| MapMan:17.1.3.1.18 | Gene3D:3.30.230.10 | GO:A0A078IHA7 | UniProt:A0A078IHA7 | EnsemblPlants:CDY49352 | ProteinID:CDY49352 |
| ProteinID:CDY49352.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00092890001 | InterPro:IPR014721 |
| PFAM:PF00380 | ScanProsite:PS00360 | PANTHER:PTHR21569 | PANTHER:PTHR21569:SF7 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr |
| InterPro:Ribosomal_S9 | InterPro:Ribosomal_S9_CS | SUPFAM:SSF54211 | UniParc:UPI0001BA44C8 | : | : |
Description
BnaA05g33140DBnaA05g33140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHA7]
Coordinates
chrLK032826:+:99484..100190
Molecular Weight (calculated)
16602.6 Da
IEP (calculated)
10.902
GRAVY (calculated)
-0.425
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKPAKQSV QCFGRKKTAV AVTHCKPGCG MIKLNGSPIE LFQPEILRFK IYEPVLLLGK HRFAGVDMRI RVKGGGHTSQ VYAIRQSIAK ALVAFYQKYV
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR
001: MATQPAKESV QCFGRKKTAT AVTYCKRGSG MIKLNGSPIE LYQPEILRFK IFEPVLLLGK HRFAGVDMRI RATGGGNTSR VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILMRYDRTLL VADPRRCESK KFGGPGARAR FQKSYR
101: DEQSKKEIKD ILMRYDRTLL VADPRRCESK KFGGPGARAR FQKSYR
Arabidopsis Description
RPS16B40S ribosomal protein S16-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8X9]
SUBAcon: [cytosol,plastid,mitochondrion]
SUBAcon: [cytosol,plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.