CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02990.t01	Wine grape	cytosol	88.39	95.14
VIT_03s0063g00130.t01	Wine grape	cytosol	87.74	94.44
KRH60450	Soybean	nucleus	91.61	90.45
PGSC0003DMT400077257	Potato	cytosol	85.16	89.8
Solyc04g026100.1.1	Tomato	nucleus	85.16	89.8
KRH70668	Soybean	nucleus	89.03	88.46
KRH50326	Soybean	cytosol	89.03	88.46
PGSC0003DMT400010554	Potato	cytosol	83.87	88.44
Solyc05g005690.1.1	Tomato	nucleus	83.87	88.44
GSMUA_Achr7P11640_001	Banana	cytosol	52.9	88.17
Solyc01g068530.2.1	Tomato	nucleus	84.52	87.33
AT2G09990.1	Thale cress	cytosol	80.65	85.62
GSMUA_Achr3P21350_001	Banana	cytosol	52.9	85.42
GSMUA_Achr3P01630_001	Banana	cytosol	54.84	85.0
AT5G18380.1	Thale cress	cytosol	80.0	84.93
GSMUA_Achr6P10560_001	Banana	cytosol	52.9	84.54
CDX92061	Canola	cytosol	78.71	83.56
Bra006454.1-P	Field mustard	cytosol	78.06	82.88
CDY70652	Canola	extracellular	78.06	82.88
CDY51232	Canola	cytosol	78.06	82.88
CDY29988	Canola	cytosol	78.06	82.88
CDX70812	Canola	cytosol	78.06	82.88
Bra001098.1-P	Field mustard	cytosol, mitochondrion	77.42	82.19
CDY25423	Canola	cytosol	77.42	82.19
CDY21134	Canola	cytosol, mitochondrion	77.42	82.19
CDY61186	Canola	cytosol	63.23	81.67
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	76.77	81.51
CDY49352	Canola	cytosol, mitochondrion	76.77	81.51
CDY42912	Canola	cytosol, mitochondrion	76.77	81.51
Bra040145.1-P	Field mustard	cytosol, mitochondrion	76.77	81.51
GSMUA_Achr1P21580_001	Banana	cytosol	52.26	81.0
Bra040207.1-P	Field mustard	mitochondrion	76.13	80.82
Os12t0124200-01	Rice	plastid	76.77	79.87
Os11t0127900-01	Rice	plastid	76.77	79.87
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	73.55	76.51
TraesCS4A01G190500.1	Wheat	plastid	73.55	76.51
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	73.55	76.51
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	73.55	76.51
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	73.55	76.51
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	73.55	76.51
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	73.55	76.51
TraesCS5B01G141700.1	Wheat	golgi, unclear	73.55	76.51
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	73.55	76.51
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	73.55	76.51
EES15592	Sorghum	mitochondrion	73.55	76.51
CDY24915	Canola	cytosol	72.26	76.19
EES09177	Sorghum	mitochondrion	72.26	75.68
Zm00001d005023_P001	Maize	plasma membrane, plastid	72.26	75.68
Zm00001d044664_P001	Maize	plastid	72.26	75.17
GSMUA_Achr2P22080_001	Banana	cytosol	52.9	74.55
TraesCS4A01G323600.1	Wheat	mitochondrion	71.61	74.0
Zm00001d023293_P001	Maize	plasma membrane	70.32	73.15
TraesCS5B01G554700.1	Wheat	cytosol	62.58	72.93
HORVU5Hr1G045620.1	Barley	plastid	74.19	64.61
CDY25446	Canola	plastid	38.71	61.22
Bra025108.1-P	Field mustard	cytosol	47.74	59.2
VIT_18s0001g14620.t01	Wine grape	cytosol	59.35	58.6
HORVU4Hr1G023570.2	Barley	mitochondrion	73.55	57.58
CDY53247	Canola	mitochondrion	34.19	35.1

Protein Annotations

EntrezGene:100816874	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EMBL:ACUP02004778	EnsemblPlantsGene:GLYMA_08G048200	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1KQE3	InterPro:IPR014721	EnsemblPlants:KRH41748
ProteinID:KRH41748	ProteinID:KRH41748.1	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI0001BA8416
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:3757154..3758525

Molecular Weight (calculated)

17370.4 Da

IEP (calculated)

10.787

GRAVY (calculated)

-0.260

Length

155 amino acids

Sequence
(BLAST)

001: MAQPAAAAAA TGAAVIEQVQ CFGRKKTAVA VTYCKRGRGL IKINGCPIEL VEPEILRFKA FEPILLLGRH RFAGVDMRIR VKGGGHTSQI YAIRQSIAKA
101: LVAYYQKYVD EQSKKEIKDI LVRYDRTLLV ADPRRCEPKK FGGRGARARF QKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.