Factsheet for Zm00001d005023_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09177	Sorghum	mitochondrion	97.3	97.3
Zm00001d044664_P001	Maize	plastid	97.3	96.64
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	93.92	93.29
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	93.92	93.29
TraesCS5B01G141700.1	Wheat	golgi, unclear	93.92	93.29
Zm00001d023293_P001	Maize	plasma membrane	93.24	92.62
GSMUA_Achr3P21350_001	Banana	cytosol	51.35	79.17
GSMUA_Achr6P10560_001	Banana	cytosol	51.35	78.35
HORVU5Hr1G045620.1	Barley	plastid	93.92	78.09
VIT_05s0020g02990.t01	Wine grape	cytosol	75.0	77.08
VIT_03s0063g00130.t01	Wine grape	cytosol	74.32	76.39
GSMUA_Achr7P11640_001	Banana	cytosol	47.97	76.34
GSMUA_Achr3P01630_001	Banana	cytosol	51.35	76.0
Solyc05g005690.1.1	Tomato	nucleus	75.0	75.51
PGSC0003DMT400010554	Potato	cytosol	75.0	75.51
GSMUA_Achr1P21580_001	Banana	cytosol	50.68	75.0
Solyc04g026100.1.1	Tomato	nucleus	73.65	74.15
PGSC0003DMT400077257	Potato	cytosol	73.65	74.15
Solyc01g068530.2.1	Tomato	nucleus	74.32	73.33
KRH41748	Soybean	nucleus	75.68	72.26
KRH60450	Soybean	nucleus	75.68	71.34
CDY21134	Canola	cytosol, mitochondrion	70.27	71.23
AT2G09990.1	Thale cress	cytosol	70.27	71.23
KRH50326	Soybean	cytosol	75.0	71.15
KRH70668	Soybean	nucleus	75.0	71.15
GSMUA_Achr2P22080_001	Banana	cytosol	52.7	70.91
AT5G18380.1	Thale cress	cytosol	69.59	70.55
CDY42912	Canola	cytosol, mitochondrion	69.59	70.55
Bra001098.1-P	Field mustard	cytosol, mitochondrion	69.59	70.55
Bra040145.1-P	Field mustard	cytosol, mitochondrion	69.59	70.55
CDY70652	Canola	extracellular	69.59	70.55
CDY51232	Canola	cytosol	68.92	69.86
CDY49352	Canola	cytosol, mitochondrion	68.92	69.86
CDY29988	Canola	cytosol	68.92	69.86
Bra006454.1-P	Field mustard	cytosol	68.92	69.86
CDX70812	Canola	cytosol	68.92	69.86
CDX92061	Canola	cytosol	68.24	69.18
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	68.24	69.18
Bra040207.1-P	Field mustard	mitochondrion	68.24	69.18
CDY25423	Canola	cytosol	68.24	69.18
CDY61186	Canola	cytosol	56.08	69.17
CDY24915	Canola	cytosol	63.51	63.95
CDY25446	Canola	plastid	35.14	53.06
Bra025108.1-P	Field mustard	cytosol	43.24	51.2
VIT_18s0001g14620.t01	Wine grape	cytosol	50.68	47.77
CDY53247	Canola	mitochondrion	28.38	27.81

Protein Annotations

EntrezGene:100283242	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	UniProt:B6TG61	EMBL:EU963976	EMBL:EU964097
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	ProteinID:ONM20009.1	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI000182DB08	EnsemblPlantsGene:Zm00001d005023	EnsemblPlants:Zm00001d005023_P001	EnsemblPlants:Zm00001d005023_T001

Description

40S ribosomal protein S16

Coordinates

chr2:+:154380003..154380449

Molecular Weight (calculated)

16750.8 Da

IEP (calculated)

11.289

GRAVY (calculated)

-0.428

Length

148 amino acids

Sequence
(BLAST)

001: MTVLSRPTPG TAQCFGRKKT AVAVAYTKPG RGLIKVNGVP IELIRPEMLR LKAFEPILLA GRSRFKDIDM RIRVRGGGKT SQIYAIRQAV AKGLVAYYQK
101: YVDEAAKKEI KDIFTRYDRT LLVADPRRCE PKKFGGRGAR ARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.