CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70668	Soybean	nucleus	99.36	99.36
VIT_05s0020g02990.t01	Wine grape	cytosol	85.9	93.06
VIT_03s0063g00130.t01	Wine grape	cytosol	85.9	93.06
PGSC0003DMT400010554	Potato	cytosol	83.97	89.12
Solyc05g005690.1.1	Tomato	nucleus	83.97	89.12
KRH41748	Soybean	nucleus	88.46	89.03
PGSC0003DMT400077257	Potato	cytosol	83.33	88.44
Solyc04g026100.1.1	Tomato	nucleus	83.33	88.44
KRH60450	Soybean	nucleus	88.46	87.9
GSMUA_Achr3P21350_001	Banana	cytosol	53.85	87.5
GSMUA_Achr6P10560_001	Banana	cytosol	53.85	86.6
AT2G09990.1	Thale cress	cytosol	80.77	86.3
GSMUA_Achr7P11640_001	Banana	cytosol	51.28	86.02
Solyc01g068530.2.1	Tomato	nucleus	82.69	86.0
AT5G18380.1	Thale cress	cytosol	80.13	85.62
Bra006454.1-P	Field mustard	cytosol	79.49	84.93
CDY51232	Canola	cytosol	79.49	84.93
CDX92061	Canola	cytosol	79.49	84.93
CDX70812	Canola	cytosol	79.49	84.93
CDY25423	Canola	cytosol	78.85	84.25
CDY29988	Canola	cytosol	78.85	84.25
CDY70652	Canola	extracellular	78.85	84.25
CDY21134	Canola	cytosol, mitochondrion	78.21	83.56
Bra001098.1-P	Field mustard	cytosol, mitochondrion	78.21	83.56
CDY49352	Canola	cytosol, mitochondrion	77.56	82.88
CDY42912	Canola	cytosol, mitochondrion	77.56	82.88
Bra040145.1-P	Field mustard	cytosol, mitochondrion	77.56	82.88
CDY61186	Canola	cytosol	63.46	82.5
Bra040207.1-P	Field mustard	mitochondrion	76.92	82.19
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	76.92	82.19
GSMUA_Achr3P01630_001	Banana	cytosol	52.56	82.0
GSMUA_Achr1P21580_001	Banana	cytosol	51.28	80.0
CDY24915	Canola	cytosol	73.08	77.55
Os11t0127900-01	Rice	plastid	73.72	77.18
Os12t0124200-01	Rice	plastid	73.72	77.18
GSMUA_Achr2P22080_001	Banana	cytosol	53.21	75.45
EES15592	Sorghum	mitochondrion	71.79	75.17
EES09177	Sorghum	mitochondrion	71.15	75.0
Zm00001d005023_P001	Maize	plasma membrane, plastid	71.15	75.0
TraesCS5B01G141700.1	Wheat	golgi, unclear	71.15	74.5
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	71.15	74.5
Zm00001d044664_P001	Maize	plastid	71.15	74.5
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	71.15	74.5
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	71.15	74.5
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	71.15	74.5
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	71.15	74.5
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	71.15	74.5
TraesCS4A01G190500.1	Wheat	plastid	71.15	74.5
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	71.15	74.5
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	71.15	74.5
TraesCS4A01G323600.1	Wheat	mitochondrion	71.15	74.0
Zm00001d023293_P001	Maize	plasma membrane	69.87	73.15
TraesCS5B01G554700.1	Wheat	cytosol	61.54	72.18
CDY25446	Canola	plastid	39.74	63.27
HORVU5Hr1G045620.1	Barley	plastid	71.15	62.36
Bra025108.1-P	Field mustard	cytosol	48.08	60.0
VIT_18s0001g14620.t01	Wine grape	cytosol	57.69	57.32
HORVU4Hr1G023570.2	Barley	mitochondrion	71.15	56.06
CDY53247	Canola	mitochondrion	35.26	36.42

Protein Annotations

EntrezGene:100779794	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EMBL:ACUP02004680	EnsemblPlantsGene:GLYMA_07G214900	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1KM19	InterPro:IPR014721	EnsemblPlants:KRH50326
ProteinID:KRH50326	ProteinID:KRH50326.1	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI0001BA811D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:38706588..38708371

Molecular Weight (calculated)

17724.8 Da

IEP (calculated)

10.819

GRAVY (calculated)

-0.484

Length

156 amino acids

Sequence
(BLAST)

001: MSQPQPQSQP QHGQAALEQV QCFGRKKTAV AVTYCKRGRG LIKINGCPIE LVEPEILRFK AFEPILLLGK SRFAGVDMRI RVKGGGHTSQ IYAIRQSIAK
101: ALVAFYQKYV DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARAR FQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.