Factsheet for VIT_18s0001g14620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00130.t01	Wine grape	cytosol	63.06	68.75
VIT_05s0020g02990.t01	Wine grape	cytosol	61.15	66.67
Solyc04g026100.1.1	Tomato	nucleus	57.96	61.9
Solyc05g005690.1.1	Tomato	nucleus	57.96	61.9
PGSC0003DMT400010554	Potato	cytosol	57.96	61.9
PGSC0003DMT400077257	Potato	cytosol	57.96	61.9
Solyc01g068530.2.1	Tomato	nucleus	58.6	61.33
KRH41748	Soybean	nucleus	58.6	59.35
KRH60450	Soybean	nucleus	57.96	57.96
KRH50326	Soybean	cytosol	57.32	57.69
KRH70668	Soybean	nucleus	57.32	57.69
CDX92061	Canola	cytosol	52.87	56.85
AT2G09990.1	Thale cress	cytosol	52.87	56.85
CDY24915	Canola	cytosol	52.87	56.46
Bra040207.1-P	Field mustard	mitochondrion	52.23	56.16
CDY29988	Canola	cytosol	52.23	56.16
AT5G18380.1	Thale cress	cytosol	52.23	56.16
CDY70652	Canola	extracellular	52.23	56.16
Bra006454.1-P	Field mustard	cytosol	51.59	55.48
Bra001098.1-P	Field mustard	cytosol, mitochondrion	51.59	55.48
CDY51232	Canola	cytosol	51.59	55.48
CDY49352	Canola	cytosol, mitochondrion	51.59	55.48
CDY25423	Canola	cytosol	51.59	55.48
CDY21134	Canola	cytosol, mitochondrion	51.59	55.48
CDX70812	Canola	cytosol	51.59	55.48
Bra040145.1-P	Field mustard	cytosol, mitochondrion	50.96	54.79
CDY42912	Canola	cytosol, mitochondrion	50.96	54.79
Os12t0124200-01	Rice	plastid	50.96	53.69
Os11t0127900-01	Rice	plastid	50.96	53.69
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	49.68	53.42
EES09177	Sorghum	mitochondrion	48.41	51.35
GSMUA_Achr3P21350_001	Banana	cytosol	31.21	51.04
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	48.41	51.01
TraesCS4A01G190500.1	Wheat	plastid	48.41	51.01
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	48.41	51.01
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	48.41	51.01
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	48.41	51.01
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	48.41	51.01
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	48.41	51.01
TraesCS5B01G141700.1	Wheat	golgi, unclear	48.41	51.01
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	48.41	51.01
Zm00001d044664_P001	Maize	plastid	48.41	51.01
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	48.41	51.01
EES15592	Sorghum	mitochondrion	48.41	51.01
Zm00001d005023_P001	Maize	plasma membrane, plastid	47.77	50.68
Zm00001d023293_P001	Maize	plasma membrane	47.13	49.66
GSMUA_Achr6P10560_001	Banana	cytosol	30.57	49.48
CDY61186	Canola	cytosol	37.58	49.17
GSMUA_Achr3P01630_001	Banana	cytosol	31.21	49.0
TraesCS5B01G554700.1	Wheat	cytosol	40.13	47.37
TraesCS4A01G323600.1	Wheat	mitochondrion	44.59	46.67
GSMUA_Achr7P11640_001	Banana	cytosol	27.39	46.24
Bra025108.1-P	Field mustard	cytosol	35.67	44.8
GSMUA_Achr1P21580_001	Banana	cytosol	27.39	43.0
CDY25446	Canola	plastid	26.75	42.86
HORVU5Hr1G045620.1	Barley	plastid	48.41	42.7
GSMUA_Achr2P22080_001	Banana	cytosol	27.39	39.09
HORVU4Hr1G023570.2	Barley	mitochondrion	48.41	38.38
CDY53247	Canola	mitochondrion	32.48	33.77

Protein Annotations

EntrezGene:100243853	wikigene:100243853	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	ProteinID:CBI19896	ProteinID:CBI19896.3
UniProt:E0CQ91	EMBL:FN595227	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
InterPro:IPR014721	EntrezGene:LOC100243853	wikigene:LOC100243853	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569
PANTHER:PTHR21569:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211
UniParc:UPI0001985122	ArrayExpress:VIT_18s0001g14620	EnsemblPlantsGene:VIT_18s0001g14620	EnsemblPlants:VIT_18s0001g14620.t01	RefSeq:XP_002279524	RefSeq:XP_002279524.2
RefSeq:XP_010664959.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:12678950..12679433

Molecular Weight (calculated)

17303.6 Da

IEP (calculated)

11.061

GRAVY (calculated)

-0.173

Length

157 amino acids

Sequence
(BLAST)

001: MASPVESVQC FGRKKIVVAV TYCKRGRGLI KINGCPIKAV EPILLLGRHR FADVDMRTRV KGGGHTSQIY AIRQSIAKAL VAFYQKYVDE QCKKEHVDVP
101: RKRRASAASL RHLFRRGGVG RCRCGEVARV LKPGGARGEV GCEQMGALGL PMARIWA

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.