Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P21350_001 | Banana | cytosol | 95.88 | 96.88 |
| GSMUA_Achr3P01630_001 | Banana | cytosol | 92.78 | 90.0 |
| GSMUA_Achr7P11640_001 | Banana | cytosol | 78.35 | 81.72 |
| GSMUA_Achr1P21580_001 | Banana | cytosol | 74.23 | 72.0 |
| GSMUA_Achr2P22080_001 | Banana | cytosol | 77.32 | 68.18 |
| VIT_05s0020g02990.t01 | Wine grape | cytosol | 86.6 | 58.33 |
| AT5G18380.1 | Thale cress | cytosol | 87.63 | 58.22 |
| AT2G09990.1 | Thale cress | cytosol | 87.63 | 58.22 |
| PGSC0003DMT400077257 | Potato | cytosol | 87.63 | 57.82 |
| Solyc04g026100.1.1 | Tomato | nucleus | 87.63 | 57.82 |
| VIT_03s0063g00130.t01 | Wine grape | cytosol | 85.57 | 57.64 |
| CDY61186 | Canola | cytosol | 71.13 | 57.5 |
| Solyc05g005690.1.1 | Tomato | nucleus | 86.6 | 57.14 |
| PGSC0003DMT400010554 | Potato | cytosol | 86.6 | 57.14 |
| CDY29988 | Canola | cytosol | 85.57 | 56.85 |
| CDY51232 | Canola | cytosol | 85.57 | 56.85 |
| CDY25423 | Canola | cytosol | 85.57 | 56.85 |
| CDY70652 | Canola | extracellular | 85.57 | 56.85 |
| CDY21134 | Canola | cytosol, mitochondrion | 85.57 | 56.85 |
| CDX92061 | Canola | cytosol | 85.57 | 56.85 |
| CDX70812 | Canola | cytosol | 85.57 | 56.85 |
| Bra006454.1-P | Field mustard | cytosol | 85.57 | 56.85 |
| Bra001098.1-P | Field mustard | cytosol, mitochondrion | 85.57 | 56.85 |
| CDY42912 | Canola | cytosol, mitochondrion | 84.54 | 56.16 |
| CDY49352 | Canola | cytosol, mitochondrion | 84.54 | 56.16 |
| Bra040145.1-P | Field mustard | cytosol, mitochondrion | 84.54 | 56.16 |
| Bra040207.1-P | Field mustard | mitochondrion | 83.51 | 55.48 |
| Solyc01g068530.2.1 | Tomato | nucleus | 85.57 | 55.33 |
| AT3G04230.1 | Thale cress | cytosol, mitochondrion, plastid | 82.47 | 54.79 |
| KRH50326 | Soybean | cytosol | 86.6 | 53.85 |
| KRH70668 | Soybean | nucleus | 86.6 | 53.85 |
| KRH60450 | Soybean | nucleus | 86.6 | 53.5 |
| KRH41748 | Soybean | nucleus | 84.54 | 52.9 |
| Os11t0127900-01 | Rice | plastid | 80.41 | 52.35 |
| Os12t0124200-01 | Rice | plastid | 80.41 | 52.35 |
| EES15592 | Sorghum | mitochondrion | 79.38 | 51.68 |
| Zm00001d005023_P001 | Maize | plasma membrane, plastid | 78.35 | 51.35 |
| EES09177 | Sorghum | mitochondrion | 78.35 | 51.35 |
| TraesCS5B01G554700.1 | Wheat | cytosol | 70.1 | 51.13 |
| CDY24915 | Canola | cytosol | 77.32 | 51.02 |
| TraesCS5D01G149100.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| Zm00001d044664_P001 | Maize | plastid | 78.35 | 51.01 |
| TraesCS5B01G141700.1 | Wheat | golgi, unclear | 78.35 | 51.01 |
| TraesCS5A01G142900.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| TraesCS4D01G123000.1 | Wheat | golgi, nucleus, unclear | 78.35 | 51.01 |
| TraesCS4D01G122900.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| TraesCS4B01G129600.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| TraesCS4B01G129400.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| TraesCS4A01G190500.1 | Wheat | plastid | 78.35 | 51.01 |
| TraesCS4A01G190200.1 | Wheat | mitochondrion, plastid | 78.35 | 51.01 |
| HORVU4Hr1G023530.1 | Barley | mitochondrion, plastid | 78.35 | 51.01 |
| TraesCS4A01G323600.1 | Wheat | mitochondrion | 78.35 | 50.67 |
| Zm00001d023293_P001 | Maize | plasma membrane | 77.32 | 50.34 |
| CDY25446 | Canola | plastid | 45.36 | 44.9 |
| HORVU5Hr1G045620.1 | Barley | plastid | 78.35 | 42.7 |
| HORVU4Hr1G023570.2 | Barley | mitochondrion | 78.35 | 38.38 |
| Bra025108.1-P | Field mustard | cytosol | 44.33 | 34.4 |
| VIT_18s0001g14620.t01 | Wine grape | cytosol | 49.48 | 30.57 |
| CDY53247 | Canola | mitochondrion | 22.68 | 14.57 |
Protein Annotations
| Gene3D:3.30.230.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr6G10560_001 | EnsemblPlants:GSMUA_Achr6P10560_001 |
| EnsemblPlants:GSMUA_Achr6T10560_001 | InterPro:IPR014721 | UniProt:M0T5V5 | PFAM:PF00380 | PANTHER:PTHR21569 | PANTHER:PTHR21569:SF7 |
| InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S9 | SUPFAM:SSF54211 | UniParc:UPI00029551F5 | : |
Description
40S ribosomal protein S16-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10560_001]
Coordinates
chr6:-:7027936..7028672
Molecular Weight (calculated)
10921.4 Da
IEP (calculated)
10.904
GRAVY (calculated)
-0.476
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MATTAATDSV QCFGRKKTAV AVAHCKRGRG LIKVNGVPIE LALVAFHQKY VDEQSKKEIK DILVRYDRTL LVADPRRCEP KKFGGRGARA RFQKSYR
001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPVLLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
Arabidopsis Description
RPS16C40S ribosomal protein S16-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42340]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.