Factsheet for Os11t0127900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
nucleus: 19621931
plastid: 21433289
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0124200-01	Rice	plastid	100.0	100.0
TraesCS4A01G190500.1	Wheat	plastid	94.63	94.63
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	93.96	93.96
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	93.96	93.96
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	93.96	93.96
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	93.96	93.96
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	93.96	93.96
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	93.96	93.96
GSMUA_Achr3P01630_001	Banana	cytosol	54.36	81.0
VIT_05s0020g02990.t01	Wine grape	cytosol	77.85	80.56
GSMUA_Achr6P10560_001	Banana	cytosol	52.35	80.41
GSMUA_Achr3P21350_001	Banana	cytosol	51.68	80.21
VIT_03s0063g00130.t01	Wine grape	cytosol	77.18	79.86
GSMUA_Achr7P11640_001	Banana	cytosol	48.99	78.49
PGSC0003DMT400010554	Potato	cytosol	75.84	76.87
Solyc05g005690.1.1	Tomato	nucleus	75.84	76.87
KRH41748	Soybean	nucleus	79.87	76.77
PGSC0003DMT400077257	Potato	cytosol	75.17	76.19
Solyc04g026100.1.1	Tomato	nucleus	75.17	76.19
CDY21134	Canola	cytosol, mitochondrion	74.5	76.03
CDY70652	Canola	extracellular	73.83	75.34
Bra001098.1-P	Field mustard	cytosol, mitochondrion	73.83	75.34
CDY42912	Canola	cytosol, mitochondrion	73.83	75.34
Bra040145.1-P	Field mustard	cytosol, mitochondrion	73.83	75.34
GSMUA_Achr1P21580_001	Banana	cytosol	50.34	75.0
Solyc01g068530.2.1	Tomato	nucleus	75.17	74.67
CDX70812	Canola	cytosol	73.15	74.66
Bra006454.1-P	Field mustard	cytosol	73.15	74.66
CDY29988	Canola	cytosol	73.15	74.66
CDY49352	Canola	cytosol, mitochondrion	73.15	74.66
CDY51232	Canola	cytosol	73.15	74.66
AT2G09990.1	Thale cress	cytosol	73.15	74.66
CDX92061	Canola	cytosol	72.48	73.97
CDY25423	Canola	cytosol	72.48	73.97
AT5G18380.1	Thale cress	cytosol	72.48	73.97
Bra040207.1-P	Field mustard	mitochondrion	72.48	73.97
KRH60450	Soybean	nucleus	77.85	73.89
KRH50326	Soybean	cytosol	77.18	73.72
KRH70668	Soybean	nucleus	77.18	73.72
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	71.14	72.6
CDY61186	Canola	cytosol	58.39	72.5
GSMUA_Achr2P22080_001	Banana	cytosol	52.35	70.91
HORVU4Hr1G023570.2	Barley	mitochondrion	93.96	70.71
CDY24915	Canola	cytosol	67.11	68.03
CDY25446	Canola	plastid	38.26	58.16
Bra025108.1-P	Field mustard	cytosol	44.97	53.6
VIT_18s0001g14620.t01	Wine grape	cytosol	53.69	50.96
CDY53247	Canola	mitochondrion	30.2	29.8

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EntrezGene:4349653	EntrezGene:4351374	ProteinID:ABA91285.1	ProteinID:ABA95713.1
EMBL:AK058697	EMBL:AK059550	EMBL:AK121503	ProteinID:BAF27477.1	ProteinID:BAF29058.1	ProteinID:BAT12491.1
ProteinID:BAT15680.1	ProteinID:EAZ17271.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	InterPro:IPR014721
EnsemblPlantsGene:Os11g0127900	EnsemblPlants:Os11t0127900-01	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
UniProt:Q0IQF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211
UniParc:UPI0000682651	RefSeq:XP_015617880.1	RefSeq:XP_015620704.1	:	:	:

Description

ribosomal protein 1Similar to 40S ribosomal protein S16. (Os11t0127900-01)

Coordinates

chr11:-:1285452..1286251

Molecular Weight (calculated)

16819.9 Da

IEP (calculated)

11.189

GRAVY (calculated)

-0.384

Length

149 amino acids

Sequence
(BLAST)

001: MAAALTRPPP GTVQCFGRKK TAVAVSYCKP GRGLIKVNGV PIELIRPEML RLKAFEPILL AGRSRFKDID MRIRVRGGGK TSQIYAIRQA IAKALVAYYQ
101: KYVDEASKKE VKDIFARYDR TLLVADPRRC EPKKFGGRGA RARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.