Factsheet for GSMUA_Achr3P21350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10560_001	Banana	cytosol	96.88	95.88
GSMUA_Achr3P01630_001	Banana	cytosol	94.79	91.0
GSMUA_Achr7P11640_001	Banana	cytosol	82.29	84.95
GSMUA_Achr1P21580_001	Banana	cytosol	78.12	75.0
GSMUA_Achr2P22080_001	Banana	cytosol	81.25	70.91
VIT_03s0063g00130.t01	Wine grape	cytosol	87.5	58.33
VIT_05s0020g02990.t01	Wine grape	cytosol	87.5	58.33
Solyc04g026100.1.1	Tomato	nucleus	88.54	57.82
Solyc05g005690.1.1	Tomato	nucleus	88.54	57.82
PGSC0003DMT400010554	Potato	cytosol	88.54	57.82
PGSC0003DMT400077257	Potato	cytosol	88.54	57.82
Solyc01g068530.2.1	Tomato	nucleus	87.5	56.0
AT2G09990.1	Thale cress	cytosol	84.38	55.48
AT5G18380.1	Thale cress	cytosol	84.38	55.48
CDY61186	Canola	cytosol	68.75	55.0
CDY70652	Canola	extracellular	83.33	54.79
CDY51232	Canola	cytosol	83.33	54.79
CDY29988	Canola	cytosol	83.33	54.79
Bra001098.1-P	Field mustard	cytosol, mitochondrion	83.33	54.79
Bra006454.1-P	Field mustard	cytosol	83.33	54.79
CDY25423	Canola	cytosol	83.33	54.79
CDY21134	Canola	cytosol, mitochondrion	83.33	54.79
CDX92061	Canola	cytosol	83.33	54.79
CDX70812	Canola	cytosol	83.33	54.79
CDY42912	Canola	cytosol, mitochondrion	82.29	54.11
CDY49352	Canola	cytosol, mitochondrion	82.29	54.11
Bra040145.1-P	Field mustard	cytosol, mitochondrion	82.29	54.11
KRH70668	Soybean	nucleus	87.5	53.85
KRH50326	Soybean	cytosol	87.5	53.85
KRH60450	Soybean	nucleus	87.5	53.5
Bra040207.1-P	Field mustard	mitochondrion	81.25	53.42
KRH41748	Soybean	nucleus	85.42	52.9
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	80.21	52.74
TraesCS5B01G554700.1	Wheat	cytosol	71.88	51.88
Os11t0127900-01	Rice	plastid	80.21	51.68
Os12t0124200-01	Rice	plastid	80.21	51.68
EES15592	Sorghum	mitochondrion	80.21	51.68
Zm00001d005023_P001	Maize	plasma membrane, plastid	79.17	51.35
EES09177	Sorghum	mitochondrion	79.17	51.35
TraesCS4A01G323600.1	Wheat	mitochondrion	80.21	51.33
Zm00001d044664_P001	Maize	plastid	79.17	51.01
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	78.12	50.34
Zm00001d023293_P001	Maize	plasma membrane	78.12	50.34
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	78.12	50.34
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	78.12	50.34
TraesCS5B01G141700.1	Wheat	golgi, unclear	78.12	50.34
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	78.12	50.34
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	78.12	50.34
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	78.12	50.34
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	78.12	50.34
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	78.12	50.34
TraesCS4A01G190500.1	Wheat	plastid	78.12	50.34
CDY24915	Canola	cytosol	75.0	48.98
CDY25446	Canola	plastid	45.83	44.9
HORVU5Hr1G045620.1	Barley	plastid	78.12	42.13
HORVU4Hr1G023570.2	Barley	mitochondrion	78.12	37.88
Bra025108.1-P	Field mustard	cytosol	45.83	35.2
VIT_18s0001g14620.t01	Wine grape	cytosol	51.04	31.21
CDY53247	Canola	mitochondrion	25.0	15.89

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G21350_001	EnsemblPlants:GSMUA_Achr3P21350_001
EnsemblPlants:GSMUA_Achr3T21350_001	InterPro:IPR014721	UniProt:M0SGK1	PFAM:PF00380	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	SUPFAM:SSF54211	UniParc:UPI000294DAEB	:

Description

40S ribosomal protein S16 [Source:GMGC_GENE;Acc:GSMUA_Achr3G21350_001]

Coordinates

chr3:-:22341799..22342236

Molecular Weight (calculated)

10818.3 Da

IEP (calculated)

10.904

GRAVY (calculated)

-0.423

Length

96 amino acids

Sequence
(BLAST)

1: MATAAVDSVQ CFGRKKTAVA VAHCKRGRGL IKVNGVPIEL ALVAFHQKYV DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARAR FQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.