Factsheet for Solyc05g005690.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010554	Potato	cytosol	100.0	100.0
Solyc04g026100.1.1	Tomato	nucleus	94.56	94.56
Solyc01g068530.2.1	Tomato	nucleus	95.92	94.0
VIT_03s0063g00130.t01	Wine grape	cytosol	89.8	91.67
VIT_05s0020g02990.t01	Wine grape	cytosol	88.44	90.28
GSMUA_Achr3P21350_001	Banana	cytosol	57.82	88.54
GSMUA_Achr7P11640_001	Banana	cytosol	55.78	88.17
GSMUA_Achr6P10560_001	Banana	cytosol	57.14	86.6
GSMUA_Achr3P01630_001	Banana	cytosol	58.5	86.0
CDY29988	Canola	cytosol	85.03	85.62
AT2G09990.1	Thale cress	cytosol	84.35	84.93
CDX70812	Canola	cytosol	84.35	84.93
CDX92061	Canola	cytosol	84.35	84.93
CDY21134	Canola	cytosol, mitochondrion	84.35	84.93
Bra006454.1-P	Field mustard	cytosol	84.35	84.93
CDY51232	Canola	cytosol	84.35	84.93
KRH60450	Soybean	nucleus	90.48	84.71
CDY70652	Canola	extracellular	83.67	84.25
CDY42912	Canola	cytosol, mitochondrion	83.67	84.25
CDY49352	Canola	cytosol, mitochondrion	83.67	84.25
CDY25423	Canola	cytosol	83.67	84.25
Bra040145.1-P	Field mustard	cytosol, mitochondrion	83.67	84.25
Bra001098.1-P	Field mustard	cytosol, mitochondrion	83.67	84.25
AT5G18380.1	Thale cress	cytosol	83.67	84.25
GSMUA_Achr1P21580_001	Banana	cytosol	57.14	84.0
KRH50326	Soybean	cytosol	89.12	83.97
KRH70668	Soybean	nucleus	89.12	83.97
KRH41748	Soybean	nucleus	88.44	83.87
Bra040207.1-P	Field mustard	mitochondrion	82.99	83.56
CDY61186	Canola	cytosol	68.03	83.33
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	78.91	79.45
GSMUA_Achr2P22080_001	Banana	cytosol	58.5	78.18
CDY24915	Canola	cytosol	76.87	76.87
Os11t0127900-01	Rice	plastid	76.87	75.84
Os12t0124200-01	Rice	plastid	76.87	75.84
EES09177	Sorghum	mitochondrion	75.51	75.0
Zm00001d005023_P001	Maize	plasma membrane, plastid	75.51	75.0
Zm00001d044664_P001	Maize	plastid	75.51	74.5
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	74.83	73.83
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	74.83	73.83
TraesCS4A01G190500.1	Wheat	plastid	74.83	73.83
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	74.83	73.83
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	74.83	73.83
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	74.83	73.83
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	74.83	73.83
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	74.83	73.83
TraesCS5B01G141700.1	Wheat	golgi, unclear	74.83	73.83
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	74.83	73.83
EES15592	Sorghum	mitochondrion	74.83	73.83
TraesCS4A01G323600.1	Wheat	mitochondrion	74.83	73.33
Zm00001d023293_P001	Maize	plasma membrane	73.47	72.48
TraesCS5B01G554700.1	Wheat	cytosol	65.31	72.18
CDY25446	Canola	plastid	42.18	63.27
HORVU5Hr1G045620.1	Barley	plastid	74.83	61.8
Bra025108.1-P	Field mustard	cytosol	51.02	60.0
VIT_18s0001g14620.t01	Wine grape	cytosol	61.9	57.96
HORVU4Hr1G023570.2	Barley	mitochondrion	74.83	55.56
CDY53247	Canola	mitochondrion	38.78	37.75

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
InterPro:IPR014721	UniProt:K4BW97	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:Solyc05g005690.1
EnsemblPlants:Solyc05g005690.1.1	UniParc:UPI0002766FEE	:	:	:	:

Description

No Description!

Coordinates

chr5:-:510033..510476

Molecular Weight (calculated)

16736.7 Da

IEP (calculated)

11.057

GRAVY (calculated)

-0.376

Length

147 amino acids

Sequence
(BLAST)

001: MQAAPATVES VQCFGRKKTA VAVTHCKRGR GLIKINGVPI ELVQPEILRY KAFEPILLLG RQRFAGVDMR IRVKGGGHTS QIYAIRQSIA KALVAFYQKY
101: VDEQTKKEIK DILIRYDRTL LVADPRRCEP KKFGGRGARS RFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.