Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- plastid 4
- cytosol 3
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 27291164 endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g02990.t01 | Wine grape | cytosol | 86.62 | 94.44 |
| VIT_03s0063g00130.t01 | Wine grape | cytosol | 85.99 | 93.75 |
| KRH41748 | Soybean | nucleus | 90.45 | 91.61 |
| Solyc04g026100.1.1 | Tomato | nucleus | 84.71 | 90.48 |
| PGSC0003DMT400010554 | Potato | cytosol | 84.71 | 90.48 |
| PGSC0003DMT400077257 | Potato | cytosol | 84.71 | 90.48 |
| Solyc05g005690.1.1 | Tomato | nucleus | 84.71 | 90.48 |
| KRH70668 | Soybean | nucleus | 87.9 | 88.46 |
| KRH50326 | Soybean | cytosol | 87.9 | 88.46 |
| Solyc01g068530.2.1 | Tomato | nucleus | 84.08 | 88.0 |
| GSMUA_Achr3P21350_001 | Banana | cytosol | 53.5 | 87.5 |
| GSMUA_Achr7P11640_001 | Banana | cytosol | 51.59 | 87.1 |
| AT2G09990.1 | Thale cress | cytosol | 80.89 | 86.99 |
| GSMUA_Achr6P10560_001 | Banana | cytosol | 53.5 | 86.6 |
| AT5G18380.1 | Thale cress | cytosol | 80.25 | 86.3 |
| GSMUA_Achr3P01630_001 | Banana | cytosol | 54.14 | 85.0 |
| CDX92061 | Canola | cytosol | 78.98 | 84.93 |
| CDY51232 | Canola | cytosol | 78.34 | 84.25 |
| CDY70652 | Canola | extracellular | 78.34 | 84.25 |
| Bra006454.1-P | Field mustard | cytosol | 78.34 | 84.25 |
| CDY29988 | Canola | cytosol | 78.34 | 84.25 |
| CDX70812 | Canola | cytosol | 78.34 | 84.25 |
| Bra001098.1-P | Field mustard | cytosol, mitochondrion | 77.71 | 83.56 |
| CDY25423 | Canola | cytosol | 77.71 | 83.56 |
| CDY21134 | Canola | cytosol, mitochondrion | 77.71 | 83.56 |
| CDY61186 | Canola | cytosol | 63.69 | 83.33 |
| CDY49352 | Canola | cytosol, mitochondrion | 77.07 | 82.88 |
| CDY42912 | Canola | cytosol, mitochondrion | 77.07 | 82.88 |
| Bra040145.1-P | Field mustard | cytosol, mitochondrion | 77.07 | 82.88 |
| AT3G04230.1 | Thale cress | cytosol, mitochondrion, plastid | 77.07 | 82.88 |
| Bra040207.1-P | Field mustard | mitochondrion | 76.43 | 82.19 |
| GSMUA_Achr1P21580_001 | Banana | cytosol | 51.59 | 81.0 |
| Os11t0127900-01 | Rice | plastid | 73.89 | 77.85 |
| Os12t0124200-01 | Rice | plastid | 73.89 | 77.85 |
| CDY24915 | Canola | cytosol | 72.61 | 77.55 |
| GSMUA_Achr2P22080_001 | Banana | cytosol | 53.5 | 76.36 |
| EES15592 | Sorghum | mitochondrion | 71.97 | 75.84 |
| EES09177 | Sorghum | mitochondrion | 71.34 | 75.68 |
| Zm00001d005023_P001 | Maize | plasma membrane, plastid | 71.34 | 75.68 |
| TraesCS5B01G141700.1 | Wheat | golgi, unclear | 71.34 | 75.17 |
| TraesCS5D01G149100.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| Zm00001d044664_P001 | Maize | plastid | 71.34 | 75.17 |
| TraesCS5A01G142900.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| TraesCS4D01G123000.1 | Wheat | golgi, nucleus, unclear | 71.34 | 75.17 |
| TraesCS4D01G122900.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| TraesCS4B01G129600.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| TraesCS4B01G129400.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| TraesCS4A01G190500.1 | Wheat | plastid | 71.34 | 75.17 |
| TraesCS4A01G190200.1 | Wheat | mitochondrion, plastid | 71.34 | 75.17 |
| HORVU4Hr1G023530.1 | Barley | mitochondrion, plastid | 71.34 | 75.17 |
| TraesCS4A01G323600.1 | Wheat | mitochondrion | 70.06 | 73.33 |
| Zm00001d023293_P001 | Maize | plasma membrane | 69.43 | 73.15 |
| TraesCS5B01G554700.1 | Wheat | cytosol | 61.15 | 72.18 |
| HORVU5Hr1G045620.1 | Barley | plastid | 71.34 | 62.92 |
| CDY25446 | Canola | plastid | 38.22 | 61.22 |
| Bra025108.1-P | Field mustard | cytosol | 47.13 | 59.2 |
| VIT_18s0001g14620.t01 | Wine grape | cytosol | 57.96 | 57.96 |
| HORVU4Hr1G023570.2 | Barley | mitochondrion | 71.34 | 56.57 |
| CDY53247 | Canola | mitochondrion | 34.39 | 35.76 |
Protein Annotations
| EntrezGene:100527911 | MapMan:17.1.3.1.18 | Gene3D:3.30.230.10 | EMBL:ACUP02003364 | EMBL:BT092804 | UniProt:C6T5U0 |
| EnsemblPlantsGene:GLYMA_05G241200 | GO:GO:0000462 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR014721 |
| EnsemblPlants:KRH60450 | ProteinID:KRH60450 | ProteinID:KRH60450.1 | PFAM:PF00380 | ScanProsite:PS00360 | PANTHER:PTHR21569 |
| PANTHER:PTHR21569:SF7 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S9 | InterPro:Ribosomal_S9_CS | SUPFAM:SSF54211 |
| UniParc:UPI0001B15F79 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:41615990..41617306
Molecular Weight (calculated)
17629.8 Da
IEP (calculated)
10.787
GRAVY (calculated)
-0.212
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVIFSSAIP GGAAPAAIEQ VQCFGRKKTA VAVTYCKRGR GLIKINGCPI ELVEPEILRF KAFEPILLLG RHRFAGVDMR IRVKGGGHTS QIYAIRQSIA
101: KALVAYYQKY VDEQSKKEIK DILVRYDRTL LVADPRRCEP KKFGGRGARA RFQKSYR
101: KALVAYYQKY VDEQSKKEIK DILVRYDRTL LVADPRRCEP KKFGGRGARA RFQKSYR
001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
Arabidopsis Description
RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.