CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
extracellular 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005023_P001	Maize	plasma membrane, plastid	97.3	97.3
EES15592	Sorghum	mitochondrion	95.95	95.3
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	95.27	94.63
TraesCS5B01G141700.1	Wheat	golgi, unclear	95.27	94.63
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	95.27	94.63
HORVU5Hr1G045620.1	Barley	plastid	95.27	79.21
GSMUA_Achr3P21350_001	Banana	cytosol	51.35	79.17
GSMUA_Achr6P10560_001	Banana	cytosol	51.35	78.35
VIT_05s0020g02990.t01	Wine grape	cytosol	75.0	77.08
VIT_03s0063g00130.t01	Wine grape	cytosol	74.32	76.39
GSMUA_Achr7P11640_001	Banana	cytosol	47.97	76.34
GSMUA_Achr1P21580_001	Banana	cytosol	51.35	76.0
GSMUA_Achr3P01630_001	Banana	cytosol	51.35	76.0
Solyc05g005690.1.1	Tomato	nucleus	75.0	75.51
PGSC0003DMT400010554	Potato	cytosol	75.0	75.51
Solyc04g026100.1.1	Tomato	nucleus	73.65	74.15
PGSC0003DMT400077257	Potato	cytosol	73.65	74.15
Solyc01g068530.2.1	Tomato	nucleus	74.32	73.33
CDY21134	Canola	cytosol, mitochondrion	71.62	72.6
KRH41748	Soybean	nucleus	75.68	72.26
Bra001098.1-P	Field mustard	cytosol, mitochondrion	70.95	71.92
CDY42912	Canola	cytosol, mitochondrion	70.95	71.92
Bra040145.1-P	Field mustard	cytosol, mitochondrion	70.95	71.92
CDY70652	Canola	extracellular	70.95	71.92
KRH60450	Soybean	nucleus	75.68	71.34
CDY29988	Canola	cytosol	70.27	71.23
Bra006454.1-P	Field mustard	cytosol	70.27	71.23
CDX70812	Canola	cytosol	70.27	71.23
CDY49352	Canola	cytosol, mitochondrion	70.27	71.23
AT2G09990.1	Thale cress	cytosol	70.27	71.23
CDY51232	Canola	cytosol	70.27	71.23
KRH50326	Soybean	cytosol	75.0	71.15
KRH70668	Soybean	nucleus	75.0	71.15
GSMUA_Achr2P22080_001	Banana	cytosol	52.7	70.91
CDY61186	Canola	cytosol	57.43	70.83
Bra040207.1-P	Field mustard	mitochondrion	69.59	70.55
AT5G18380.1	Thale cress	cytosol	69.59	70.55
CDY25423	Canola	cytosol	69.59	70.55
CDX92061	Canola	cytosol	69.59	70.55
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	68.24	69.18
CDY24915	Canola	cytosol	64.86	65.31
CDY25446	Canola	plastid	35.81	54.08
Bra025108.1-P	Field mustard	cytosol	43.92	52.0
VIT_18s0001g14620.t01	Wine grape	cytosol	51.35	48.41
CDY53247	Canola	mitochondrion	29.05	28.48

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EntrezGene:8068750	UniProt:C5Y3N7	EnsemblPlants:EES09177	ProteinID:EES09177
ProteinID:EES09177.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR014721
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	EnsemblPlantsGene:SORBI_3005G019700	SUPFAM:SSF54211	unigene:Sbi.17985	UniParc:UPI0001A866E7
RefSeq:XP_002450189.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1809248..1811430

Molecular Weight (calculated)

16736.7 Da

IEP (calculated)

11.289

GRAVY (calculated)

-0.416

Length

148 amino acids

Sequence
(BLAST)

001: MSVLSRPTPG TVQCFGRKKT AVAVAYTKPG RGLIKVNGVP IELIRPEMLR LKAFEPILLA GRSRFKDIDM RIRVRGGGKT SQIYAIRQAV AKGLVAYYQK
101: YVDEAAKKEV KDIFSRYDRT LLVADPRRCE PKKFGGRGAR ARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.