Factsheet for VIT_05s0020g02990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00130.t01	Wine grape	cytosol	96.53	96.53
PGSC0003DMT400077257	Potato	cytosol	93.06	91.16
Solyc04g026100.1.1	Tomato	nucleus	93.06	91.16
PGSC0003DMT400010554	Potato	cytosol	90.28	88.44
Solyc05g005690.1.1	Tomato	nucleus	90.28	88.44
KRH41748	Soybean	nucleus	95.14	88.39
GSMUA_Achr3P21350_001	Banana	cytosol	58.33	87.5
Solyc01g068530.2.1	Tomato	nucleus	90.97	87.33
GSMUA_Achr7P11640_001	Banana	cytosol	56.25	87.1
KRH60450	Soybean	nucleus	94.44	86.62
GSMUA_Achr6P10560_001	Banana	cytosol	58.33	86.6
KRH70668	Soybean	nucleus	93.06	85.9
KRH50326	Soybean	cytosol	93.06	85.9
AT2G09990.1	Thale cress	cytosol	85.42	84.25
GSMUA_Achr3P01630_001	Banana	cytosol	58.33	84.0
CDX92061	Canola	cytosol	84.72	83.56
AT5G18380.1	Thale cress	cytosol	84.72	83.56
CDY70652	Canola	extracellular	84.03	82.88
CDY51232	Canola	cytosol	84.03	82.88
Bra006454.1-P	Field mustard	cytosol	84.03	82.88
CDX70812	Canola	cytosol	84.03	82.88
CDY49352	Canola	cytosol, mitochondrion	84.03	82.88
CDY29988	Canola	cytosol	84.03	82.88
Bra001098.1-P	Field mustard	cytosol, mitochondrion	83.33	82.19
Bra040207.1-P	Field mustard	mitochondrion	83.33	82.19
CDY21134	Canola	cytosol, mitochondrion	83.33	82.19
CDY25423	Canola	cytosol	83.33	82.19
Bra040145.1-P	Field mustard	cytosol, mitochondrion	82.64	81.51
CDY42912	Canola	cytosol, mitochondrion	82.64	81.51
CDY61186	Canola	cytosol	67.36	80.83
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	81.25	80.14
GSMUA_Achr1P21580_001	Banana	cytosol	55.56	80.0
Os11t0127900-01	Rice	plastid	80.56	77.85
Os12t0124200-01	Rice	plastid	80.56	77.85
CDY24915	Canola	cytosol	77.78	76.19
Zm00001d005023_P001	Maize	plasma membrane, plastid	77.08	75.0
EES09177	Sorghum	mitochondrion	77.08	75.0
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	77.08	74.5
Zm00001d044664_P001	Maize	plastid	77.08	74.5
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	77.08	74.5
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	77.08	74.5
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	77.08	74.5
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	77.08	74.5
TraesCS5B01G141700.1	Wheat	golgi, unclear	77.08	74.5
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	77.08	74.5
TraesCS4A01G190500.1	Wheat	plastid	77.08	74.5
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	77.08	74.5
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	77.08	74.5
EES15592	Sorghum	mitochondrion	77.08	74.5
GSMUA_Achr2P22080_001	Banana	cytosol	56.25	73.64
Zm00001d023293_P001	Maize	plasma membrane	75.0	72.48
TraesCS4A01G323600.1	Wheat	mitochondrion	74.31	71.33
TraesCS5B01G554700.1	Wheat	cytosol	65.28	70.68
HORVU5Hr1G045620.1	Barley	plastid	77.08	62.36
CDY25446	Canola	plastid	42.36	62.24
VIT_18s0001g14620.t01	Wine grape	cytosol	66.67	61.15
Bra025108.1-P	Field mustard	cytosol	52.78	60.8
HORVU4Hr1G023570.2	Barley	mitochondrion	77.08	56.06
CDY53247	Canola	mitochondrion	38.19	36.42

Protein Annotations

EntrezGene:100254540	wikigene:100254540	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	UniProt:A5ASC2	EMBL:AM433721
ProteinID:CAN75982	ProteinID:CAN75982.1	ProteinID:CCB50400	ProteinID:CCB50400.1	EMBL:FN595749	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR014721	EntrezGene:LOC100254540	wikigene:LOC100254540
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	TIGR:TC54708	UniParc:UPI000151F30D	ArrayExpress:VIT_05s0020g02990
EnsemblPlantsGene:VIT_05s0020g02990	EnsemblPlants:VIT_05s0020g02990.t01	unigene:Vvi.7231	RefSeq:XP_002281350	RefSeq:XP_002281350.1	:

Description

No Description!

Coordinates

chr5:-:4738910..4739540

Molecular Weight (calculated)

16450.4 Da

IEP (calculated)

10.787

GRAVY (calculated)

-0.385

Length

144 amino acids

Sequence
(BLAST)

001: MAAPIESVQC FGRKKTAVAV TYCKRGRGLI KINGCPIELI EPEILRHKAY EPILLLGRHR FAGVDMRIRV KGGGHTSQIY AIRQSIAKAL VAFYQKYVDE
101: QSKKEIKDIL VRYDRTLLVA DPRRCEPKKF GGRGARARFQ KSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.