Factsheet for Solyc01g068530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005690.1.1	Tomato	nucleus	94.0	95.92
Solyc04g026100.1.1	Tomato	nucleus	93.33	95.24
VIT_03s0063g00130.t01	Wine grape	cytosol	88.67	92.36
VIT_05s0020g02990.t01	Wine grape	cytosol	87.33	90.97
GSMUA_Achr7P11640_001	Banana	cytosol	55.33	89.25
GSMUA_Achr3P21350_001	Banana	cytosol	56.0	87.5
GSMUA_Achr3P01630_001	Banana	cytosol	57.33	86.0
CDY29988	Canola	cytosol	83.33	85.62
GSMUA_Achr6P10560_001	Banana	cytosol	55.33	85.57
GSMUA_Achr1P21580_001	Banana	cytosol	56.67	85.0
CDX70812	Canola	cytosol	82.67	84.93
CDY51232	Canola	cytosol	82.67	84.93
CDY21134	Canola	cytosol, mitochondrion	82.67	84.93
CDX92061	Canola	cytosol	82.67	84.93
Bra006454.1-P	Field mustard	cytosol	82.67	84.93
AT2G09990.1	Thale cress	cytosol	82.67	84.93
KRH41748	Soybean	nucleus	87.33	84.52
CDY49352	Canola	cytosol, mitochondrion	82.0	84.25
CDY42912	Canola	cytosol, mitochondrion	82.0	84.25
CDY70652	Canola	extracellular	82.0	84.25
Bra040145.1-P	Field mustard	cytosol, mitochondrion	82.0	84.25
Bra001098.1-P	Field mustard	cytosol, mitochondrion	82.0	84.25
AT5G18380.1	Thale cress	cytosol	82.0	84.25
CDY61186	Canola	cytosol	67.33	84.17
KRH60450	Soybean	nucleus	88.0	84.08
CDY25423	Canola	cytosol	81.33	83.56
Bra040207.1-P	Field mustard	mitochondrion	81.33	83.56
KRH70668	Soybean	nucleus	86.0	82.69
KRH50326	Soybean	cytosol	86.0	82.69
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	77.33	79.45
GSMUA_Achr2P22080_001	Banana	cytosol	57.33	78.18
CDY24915	Canola	cytosol	75.33	76.87
Os11t0127900-01	Rice	plastid	74.67	75.17
Os12t0124200-01	Rice	plastid	74.67	75.17
Zm00001d005023_P001	Maize	plasma membrane, plastid	73.33	74.32
EES09177	Sorghum	mitochondrion	73.33	74.32
Zm00001d044664_P001	Maize	plastid	73.33	73.83
TraesCS4A01G323600.1	Wheat	mitochondrion	73.33	73.33
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	72.67	73.15
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	72.67	73.15
TraesCS5B01G141700.1	Wheat	golgi, unclear	72.67	73.15
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	72.67	73.15
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	72.67	73.15
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	72.67	73.15
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	72.67	73.15
TraesCS4A01G190500.1	Wheat	plastid	72.67	73.15
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	72.67	73.15
EES15592	Sorghum	mitochondrion	72.67	73.15
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	72.67	73.15
TraesCS5B01G554700.1	Wheat	cytosol	64.0	72.18
Zm00001d023293_P001	Maize	plasma membrane	71.33	71.81
CDY25446	Canola	plastid	40.67	62.24
HORVU5Hr1G045620.1	Barley	plastid	72.67	61.24
Bra025108.1-P	Field mustard	cytosol	50.0	60.0
VIT_18s0001g14620.t01	Wine grape	cytosol	61.33	58.6
HORVU4Hr1G023570.2	Barley	mitochondrion	72.67	55.05
CDY53247	Canola	mitochondrion	38.67	38.41

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
InterPro:IPR014721	UniProt:K4AX99	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:Solyc01g068530.2
EnsemblPlants:Solyc01g068530.2.1	UniParc:UPI0002761739	:	:	:	:

Description

No Description!

Coordinates

chr1:-:77755934..77756653

Molecular Weight (calculated)

17116.2 Da

IEP (calculated)

11.082

GRAVY (calculated)

-0.407

Length

150 amino acids

Sequence
(BLAST)

001: MQKQEAAAAT VESVQCFGRK KTAVAVTHCK RGRGLIKING VPIELVQPEI LRYKAFEPIL LLGRHRFAGV DMRIRVKGGG HTSQIYAIRQ SIAKALVAFY
101: QKFVDEQQKK EIKDILIRYD RTLLVADPRR CEPKKFGGRG ARSRFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.