Factsheet for TraesCS4D01G123000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

plastid 5
extracellular 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	100.0	100.0
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	100.0	100.0
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	100.0	100.0
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	95.3	95.3
Os12t0124200-01	Rice	plastid	93.96	93.96
Os11t0127900-01	Rice	plastid	93.96	93.96
GSMUA_Achr6P10560_001	Banana	cytosol	51.01	78.35
GSMUA_Achr3P21350_001	Banana	cytosol	50.34	78.12
VIT_05s0020g02990.t01	Wine grape	cytosol	74.5	77.08
GSMUA_Achr3P01630_001	Banana	cytosol	51.68	77.0
VIT_03s0063g00130.t01	Wine grape	cytosol	73.83	76.39
GSMUA_Achr7P11640_001	Banana	cytosol	46.98	75.27
GSMUA_Achr1P21580_001	Banana	cytosol	50.34	75.0
Solyc05g005690.1.1	Tomato	nucleus	73.83	74.83
PGSC0003DMT400010554	Potato	cytosol	73.83	74.83
KRH41748	Soybean	nucleus	76.51	73.55
Solyc04g026100.1.1	Tomato	nucleus	72.48	73.47
PGSC0003DMT400077257	Potato	cytosol	72.48	73.47
CDY21134	Canola	cytosol, mitochondrion	71.81	73.29
Solyc01g068530.2.1	Tomato	nucleus	73.15	72.67
CDY42912	Canola	cytosol, mitochondrion	71.14	72.6
Bra001098.1-P	Field mustard	cytosol, mitochondrion	71.14	72.6
CDY70652	Canola	extracellular	71.14	72.6
Bra040145.1-P	Field mustard	cytosol, mitochondrion	71.14	72.6
AT2G09990.1	Thale cress	cytosol	70.47	71.92
Bra006454.1-P	Field mustard	cytosol	70.47	71.92
CDX70812	Canola	cytosol	70.47	71.92
CDY29988	Canola	cytosol	70.47	71.92
CDY51232	Canola	cytosol	70.47	71.92
CDY49352	Canola	cytosol, mitochondrion	70.47	71.92
CDY61186	Canola	cytosol	57.72	71.67
KRH60450	Soybean	nucleus	75.17	71.34
Bra040207.1-P	Field mustard	mitochondrion	69.8	71.23
CDX92061	Canola	cytosol	69.8	71.23
CDY25423	Canola	cytosol	69.8	71.23
AT5G18380.1	Thale cress	cytosol	69.8	71.23
KRH50326	Soybean	cytosol	74.5	71.15
KRH70668	Soybean	nucleus	74.5	71.15
GSMUA_Achr2P22080_001	Banana	cytosol	52.35	70.91
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	68.46	69.86
CDY24915	Canola	cytosol	65.1	65.99
CDY25446	Canola	plastid	35.57	54.08
Bra025108.1-P	Field mustard	cytosol	42.95	51.2
VIT_18s0001g14620.t01	Wine grape	cytosol	51.01	48.41
CDY53247	Canola	mitochondrion	29.53	29.14

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014721	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:TraesCS4D01G123000	EnsemblPlants:TraesCS4D01G123000.1	:	:

Description

No Description!

Coordinates

chr4D:-:107434660..107435304

Molecular Weight (calculated)

16823.9 Da

IEP (calculated)

11.189

GRAVY (calculated)

-0.393

Length

149 amino acids

Sequence
(BLAST)

001: MAAVLTRPTP GTVQCFGRKK TAVAVAYCKP GRGLIKVNGA PIELIRPEML RLKAFEPILL AGRSRFKDID MRIRVRGGGK TSQIYSIRQA IAKSLVAYYQ
101: KYVDEAAKKE VKEIFGRYDR TLLVADPRRC EPKKFGGRGA RARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.