CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001098.1-P	Field mustard	cytosol, mitochondrion	99.32	99.32
CDX92061	Canola	cytosol	97.95	97.95
CDY21134	Canola	cytosol, mitochondrion	97.26	97.26
CDY42912	Canola	cytosol, mitochondrion	96.58	96.58
CDX70812	Canola	cytosol	95.89	95.89
CDY51232	Canola	cytosol	95.89	95.89
CDY61186	Canola	cytosol	78.77	95.83
CDY25423	Canola	cytosol	95.21	95.21
CDY49352	Canola	cytosol, mitochondrion	95.21	95.21
CDY29988	Canola	cytosol	94.52	94.52
AT5G18380.1	Thale cress	cytosol	91.78	91.78
AT2G09990.1	Thale cress	cytosol	91.1	91.1
CDY24915	Canola	cytosol	87.67	87.07
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	85.62	85.62
GSMUA_Achr6P10560_001	Banana	cytosol	56.85	85.57
VIT_03s0063g00130.t01	Wine grape	cytosol	82.88	84.03
VIT_05s0020g02990.t01	Wine grape	cytosol	82.88	84.03
Solyc05g005690.1.1	Tomato	nucleus	84.25	83.67
Solyc04g026100.1.1	Tomato	nucleus	84.25	83.67
PGSC0003DMT400077257	Potato	cytosol	84.25	83.67
PGSC0003DMT400010554	Potato	cytosol	84.25	83.67
GSMUA_Achr3P21350_001	Banana	cytosol	54.79	83.33
Solyc01g068530.2.1	Tomato	nucleus	84.25	82.0
GSMUA_Achr7P11640_001	Banana	cytosol	50.68	79.57
KRH70668	Soybean	nucleus	84.25	78.85
KRH50326	Soybean	cytosol	84.25	78.85
KRH60450	Soybean	nucleus	84.25	78.34
KRH41748	Soybean	nucleus	82.88	78.06
GSMUA_Achr3P01630_001	Banana	cytosol	53.42	78.0
GSMUA_Achr1P21580_001	Banana	cytosol	51.37	75.0
Os11t0127900-01	Rice	plastid	75.34	73.83
Os12t0124200-01	Rice	plastid	75.34	73.83
TraesCS4A01G323600.1	Wheat	mitochondrion	73.29	71.33
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	72.6	71.14
TraesCS5B01G141700.1	Wheat	golgi, unclear	72.6	71.14
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	72.6	71.14
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	72.6	71.14
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	72.6	71.14
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	72.6	71.14
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	72.6	71.14
TraesCS4A01G190500.1	Wheat	plastid	72.6	71.14
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	72.6	71.14
EES15592	Sorghum	mitochondrion	72.6	71.14
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	72.6	71.14
EES09177	Sorghum	mitochondrion	71.92	70.95
TraesCS5B01G554700.1	Wheat	cytosol	64.38	70.68
Zm00001d044664_P001	Maize	plastid	71.92	70.47
GSMUA_Achr2P22080_001	Banana	cytosol	52.74	70.0
Zm00001d005023_P001	Maize	plasma membrane, plastid	70.55	69.59
Zm00001d023293_P001	Maize	plasma membrane	69.86	68.46
CDY25446	Canola	plastid	44.52	66.33
HORVU5Hr1G045620.1	Barley	plastid	72.6	59.55
HORVU4Hr1G023570.2	Barley	mitochondrion	72.6	53.54
VIT_18s0001g14620.t01	Wine grape	cytosol	56.16	52.23
CDY53247	Canola	mitochondrion	38.36	37.09

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:A0A078JYA7	UniProt:A0A078JYA7	EnsemblPlants:CDY70652	ProteinID:CDY70652
ProteinID:CDY70652.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00005101001	InterPro:IPR014721
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI0004EE743A	:	:

Description

BnaA03g57330DBnaA03g57330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYA7]

Coordinates

chrLK042819:+:892..1332

Molecular Weight (calculated)

16530.5 Da

IEP (calculated)

10.851

GRAVY (calculated)

-0.335

Length

146 amino acids

Sequence
(BLAST)

001: MATKQAKASV QCFGRKKTAV AVTHCKPGCG LIKLNGCPIE LFNPEILRFK IFEPVLLLGK HRFAGVDMRI RVNGGGHTSQ VYAIRQSIAK ALVAFYQKYV
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.