Factsheet for Zm00001d044664_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005023_P001	Maize	plasma membrane, plastid	96.64	97.3
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	95.3	95.3
TraesCS5B01G141700.1	Wheat	golgi, unclear	95.3	95.3
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	95.3	95.3
Zm00001d023293_P001	Maize	plasma membrane	93.29	93.29
HORVU5Hr1G045620.1	Barley	plastid	95.3	79.78
GSMUA_Achr3P21350_001	Banana	cytosol	51.01	79.17
GSMUA_Achr6P10560_001	Banana	cytosol	51.01	78.35
VIT_05s0020g02990.t01	Wine grape	cytosol	74.5	77.08
GSMUA_Achr3P01630_001	Banana	cytosol	51.68	77.0
VIT_03s0063g00130.t01	Wine grape	cytosol	73.83	76.39
GSMUA_Achr7P11640_001	Banana	cytosol	47.65	76.34
GSMUA_Achr1P21580_001	Banana	cytosol	51.01	76.0
PGSC0003DMT400010554	Potato	cytosol	74.5	75.51
Solyc05g005690.1.1	Tomato	nucleus	74.5	75.51
PGSC0003DMT400077257	Potato	cytosol	73.15	74.15
Solyc04g026100.1.1	Tomato	nucleus	73.15	74.15
Solyc01g068530.2.1	Tomato	nucleus	73.83	73.33
CDY21134	Canola	cytosol, mitochondrion	71.14	72.6
KRH41748	Soybean	nucleus	75.17	72.26
Bra001098.1-P	Field mustard	cytosol, mitochondrion	70.47	71.92
CDY70652	Canola	extracellular	70.47	71.92
CDY42912	Canola	cytosol, mitochondrion	70.47	71.92
Bra040145.1-P	Field mustard	cytosol, mitochondrion	70.47	71.92
KRH60450	Soybean	nucleus	75.17	71.34
CDY49352	Canola	cytosol, mitochondrion	69.8	71.23
Bra006454.1-P	Field mustard	cytosol	69.8	71.23
CDX70812	Canola	cytosol	69.8	71.23
CDY29988	Canola	cytosol	69.8	71.23
AT2G09990.1	Thale cress	cytosol	69.8	71.23
CDY51232	Canola	cytosol	69.8	71.23
KRH50326	Soybean	cytosol	74.5	71.15
KRH70668	Soybean	nucleus	74.5	71.15
GSMUA_Achr2P22080_001	Banana	cytosol	52.35	70.91
CDY61186	Canola	cytosol	57.05	70.83
CDY25423	Canola	cytosol	69.13	70.55
CDX92061	Canola	cytosol	69.13	70.55
Bra040207.1-P	Field mustard	mitochondrion	69.13	70.55
AT5G18380.1	Thale cress	cytosol	69.13	70.55
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	67.79	69.18
CDY24915	Canola	cytosol	64.43	65.31
CDY25446	Canola	plastid	35.57	54.08
Bra025108.1-P	Field mustard	cytosol	43.62	52.0
VIT_18s0001g14620.t01	Wine grape	cytosol	51.01	48.41
CDY53247	Canola	mitochondrion	29.53	29.14

Protein Annotations

EntrezGene:100194265	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	UniProt:B6SNQ7	EMBL:BT060887	EMBL:EU954372
EMBL:EU957429	EMBL:EU960287	EMBL:EU962896	EMBL:EU968943	EMBL:EU976423	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	ProteinID:ONM42209.1	PFAM:PF00380	ScanProsite:PS00360
PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS
SUPFAM:SSF54211	UniParc:UPI000182B761	EnsemblPlantsGene:Zm00001d044664	EnsemblPlants:Zm00001d044664_P001	EnsemblPlants:Zm00001d044664_T001	:

Description

40S ribosomal protein S16-3

Coordinates

chr3:+:234344944..234345393

Molecular Weight (calculated)

16892.9 Da

IEP (calculated)

11.289

GRAVY (calculated)

-0.435

Length

149 amino acids

Sequence
(BLAST)

001: MSTVLQRPTP GTVQCFGRKK TAVAVAYTKP GRGLIKVNGV PIELIRPEML RLKAFEPILL AGRSRFKDID MRIRVRGGGK TSQIYAIRQA VAKGLVAYYQ
101: KYVDEAAKKE VKDIFTRYDR TLLVADPRRC EPKKFGGRGA RARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.