Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42912 | Canola | cytosol, mitochondrion | 97.26 | 97.26 |
| CDY21134 | Canola | cytosol, mitochondrion | 96.58 | 96.58 |
| CDY49352 | Canola | cytosol, mitochondrion | 96.58 | 96.58 |
| CDY61186 | Canola | cytosol | 78.77 | 95.83 |
| CDX70812 | Canola | cytosol | 95.21 | 95.21 |
| CDX92061 | Canola | cytosol | 95.21 | 95.21 |
| CDY25423 | Canola | cytosol | 95.21 | 95.21 |
| CDY51232 | Canola | cytosol | 95.21 | 95.21 |
| CDY70652 | Canola | extracellular | 94.52 | 94.52 |
| AT5G18380.1 | Thale cress | cytosol | 92.47 | 92.47 |
| AT2G09990.1 | Thale cress | cytosol | 91.78 | 91.78 |
| AT3G04230.1 | Thale cress | cytosol, mitochondrion, plastid | 89.04 | 89.04 |
| CDY24915 | Canola | cytosol | 87.67 | 87.07 |
| GSMUA_Achr6P10560_001 | Banana | cytosol | 56.85 | 85.57 |
| Solyc05g005690.1.1 | Tomato | nucleus | 85.62 | 85.03 |
| Solyc04g026100.1.1 | Tomato | nucleus | 85.62 | 85.03 |
| PGSC0003DMT400077257 | Potato | cytosol | 85.62 | 85.03 |
| PGSC0003DMT400010554 | Potato | cytosol | 85.62 | 85.03 |
| VIT_05s0020g02990.t01 | Wine grape | cytosol | 82.88 | 84.03 |
| VIT_03s0063g00130.t01 | Wine grape | cytosol | 82.88 | 84.03 |
| Solyc01g068530.2.1 | Tomato | nucleus | 85.62 | 83.33 |
| GSMUA_Achr3P21350_001 | Banana | cytosol | 54.79 | 83.33 |
| GSMUA_Achr7P11640_001 | Banana | cytosol | 51.37 | 80.65 |
| GSMUA_Achr3P01630_001 | Banana | cytosol | 54.11 | 79.0 |
| KRH70668 | Soybean | nucleus | 84.25 | 78.85 |
| KRH50326 | Soybean | cytosol | 84.25 | 78.85 |
| KRH60450 | Soybean | nucleus | 84.25 | 78.34 |
| KRH41748 | Soybean | nucleus | 82.88 | 78.06 |
| GSMUA_Achr1P21580_001 | Banana | cytosol | 52.05 | 76.0 |
| Os11t0127900-01 | Rice | plastid | 74.66 | 73.15 |
| Os12t0124200-01 | Rice | plastid | 74.66 | 73.15 |
| TraesCS4A01G323600.1 | Wheat | mitochondrion | 72.6 | 70.67 |
| TraesCS4D01G123000.1 | Wheat | golgi, nucleus, unclear | 71.92 | 70.47 |
| TraesCS4D01G122900.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4B01G129600.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4B01G129400.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS4A01G190500.1 | Wheat | plastid | 71.92 | 70.47 |
| TraesCS4A01G190200.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS5A01G142900.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| EES15592 | Sorghum | mitochondrion | 71.92 | 70.47 |
| TraesCS5B01G141700.1 | Wheat | golgi, unclear | 71.92 | 70.47 |
| HORVU4Hr1G023530.1 | Barley | mitochondrion, plastid | 71.92 | 70.47 |
| TraesCS5D01G149100.1 | Wheat | mitochondrion, plastid | 71.92 | 70.47 |
| EES09177 | Sorghum | mitochondrion | 71.23 | 70.27 |
| GSMUA_Achr2P22080_001 | Banana | cytosol | 52.74 | 70.0 |
| TraesCS5B01G554700.1 | Wheat | cytosol | 63.7 | 69.92 |
| Zm00001d044664_P001 | Maize | plastid | 71.23 | 69.8 |
| Zm00001d023293_P001 | Maize | plasma membrane | 70.55 | 69.13 |
| Zm00001d005023_P001 | Maize | plasma membrane, plastid | 69.86 | 68.92 |
| CDY25446 | Canola | plastid | 44.52 | 66.33 |
| HORVU5Hr1G045620.1 | Barley | plastid | 71.92 | 58.99 |
| HORVU4Hr1G023570.2 | Barley | mitochondrion | 71.92 | 53.03 |
| VIT_18s0001g14620.t01 | Wine grape | cytosol | 56.16 | 52.23 |
| CDY53247 | Canola | mitochondrion | 38.36 | 37.09 |
Protein Annotations
| MapMan:17.1.3.1.18 | Gene3D:3.30.230.10 | GO:A0A078GZF2 | UniProt:A0A078GZF2 | EnsemblPlants:CDY29988 | ProteinID:CDY29988 |
| ProteinID:CDY29988.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00044510001 | InterPro:IPR014721 |
| PFAM:PF00380 | ScanProsite:PS00360 | PANTHER:PTHR21569 | PANTHER:PTHR21569:SF7 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr |
| InterPro:Ribosomal_S9 | InterPro:Ribosomal_S9_CS | SUPFAM:SSF54211 | UniParc:UPI0004EF1550 | : | : |
Description
BnaC01g40200DBnaC01g40200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZF2]
Coordinates
chrLK032247:-:312653..313320
Molecular Weight (calculated)
16561.4 Da
IEP (calculated)
10.898
GRAVY (calculated)
-0.390
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKPANESV QCFGRKKTAV AVTHCKRGCG MIKLNGSPIE LFQPEILRFK IFEPVLLLGK HRFAGVDMRI RVGGGGHTSQ VYAIRQSIAK ALVAFYQKYV
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR
001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPVLLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
Arabidopsis Description
RPS16C40S ribosomal protein S16-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42340]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.