Factsheet for TraesCS4A01G323600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G554700.1	Wheat	cytosol	85.33	96.24
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	89.33	89.93
TraesCS4A01G190500.1	Wheat	plastid	88.67	89.26
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	86.0	86.58
GSMUA_Achr3P21350_001	Banana	cytosol	51.33	80.21
GSMUA_Achr7P11640_001	Banana	cytosol	48.67	78.49
GSMUA_Achr6P10560_001	Banana	cytosol	50.67	78.35
GSMUA_Achr3P01630_001	Banana	cytosol	52.0	78.0
GSMUA_Achr1P21580_001	Banana	cytosol	51.33	77.0
VIT_03s0063g00130.t01	Wine grape	cytosol	72.0	75.0
PGSC0003DMT400010554	Potato	cytosol	73.33	74.83
Solyc05g005690.1.1	Tomato	nucleus	73.33	74.83
VIT_05s0020g02990.t01	Wine grape	cytosol	71.33	74.31
PGSC0003DMT400077257	Potato	cytosol	72.67	74.15
Solyc04g026100.1.1	Tomato	nucleus	72.67	74.15
CDY21134	Canola	cytosol, mitochondrion	72.0	73.97
Solyc01g068530.2.1	Tomato	nucleus	73.33	73.33
Bra040145.1-P	Field mustard	cytosol, mitochondrion	71.33	73.29
CDY42912	Canola	cytosol, mitochondrion	71.33	73.29
CDY49352	Canola	cytosol, mitochondrion	71.33	73.29
Bra001098.1-P	Field mustard	cytosol, mitochondrion	71.33	73.29
CDY70652	Canola	extracellular	71.33	73.29
GSMUA_Achr2P22080_001	Banana	cytosol	53.33	72.73
AT2G09990.1	Thale cress	cytosol	70.67	72.6
CDY51232	Canola	cytosol	70.67	72.6
CDY29988	Canola	cytosol	70.67	72.6
CDX70812	Canola	cytosol	70.67	72.6
Bra040207.1-P	Field mustard	mitochondrion	70.67	72.6
Bra006454.1-P	Field mustard	cytosol	70.67	72.6
CDY25423	Canola	cytosol	70.0	71.92
CDX92061	Canola	cytosol	70.0	71.92
AT5G18380.1	Thale cress	cytosol	70.0	71.92
CDY61186	Canola	cytosol	57.33	71.67
KRH41748	Soybean	nucleus	74.0	71.61
KRH50326	Soybean	cytosol	74.0	71.15
KRH70668	Soybean	nucleus	74.0	71.15
KRH60450	Soybean	nucleus	73.33	70.06
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	67.33	69.18
CDY24915	Canola	cytosol	64.67	65.99
CDY25446	Canola	plastid	36.0	55.1
Bra025108.1-P	Field mustard	cytosol	44.67	53.6
VIT_18s0001g14620.t01	Wine grape	cytosol	46.67	44.59
CDY53247	Canola	mitochondrion	32.0	31.79

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014721	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:TraesCS4A01G323600	EnsemblPlants:TraesCS4A01G323600.1	:	:

Description

No Description!

Coordinates

chr4A:+:611278023..611278475

Molecular Weight (calculated)

16621.8 Da

IEP (calculated)

11.414

GRAVY (calculated)

-0.286

Length

150 amino acids

Sequence
(BLAST)

001: MTAAVLARPT LGNVQCFGRK KTAVAVAHCK PGRGLIKVSG APIELVRPEM LRLKALEPIL LAGKSRFKGI DMRIRVRGGG KVSQVYSIRQ AIAKALVAYN
101: QKYVDEAAKK EVKEILGRYD RTLLVADPRR CEPKKFGGRG ARARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.