Factsheet for Solyc04g026100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077257	Potato	cytosol	100.0	100.0
Solyc05g005690.1.1	Tomato	nucleus	94.56	94.56
Solyc01g068530.2.1	Tomato	nucleus	95.24	93.33
VIT_03s0063g00130.t01	Wine grape	cytosol	91.16	93.06
VIT_05s0020g02990.t01	Wine grape	cytosol	91.16	93.06
GSMUA_Achr7P11640_001	Banana	cytosol	56.46	89.25
GSMUA_Achr3P21350_001	Banana	cytosol	57.82	88.54
GSMUA_Achr6P10560_001	Banana	cytosol	57.82	87.63
AT2G09990.1	Thale cress	cytosol	85.71	86.3
GSMUA_Achr3P01630_001	Banana	cytosol	58.5	86.0
AT5G18380.1	Thale cress	cytosol	85.03	85.62
CDY49352	Canola	cytosol, mitochondrion	85.03	85.62
CDY29988	Canola	cytosol	85.03	85.62
KRH41748	Soybean	nucleus	89.8	85.16
CDY21134	Canola	cytosol, mitochondrion	84.35	84.93
CDX92061	Canola	cytosol	84.35	84.93
CDY51232	Canola	cytosol	84.35	84.93
CDX70812	Canola	cytosol	84.35	84.93
Bra040207.1-P	Field mustard	mitochondrion	84.35	84.93
Bra006454.1-P	Field mustard	cytosol	84.35	84.93
KRH60450	Soybean	nucleus	90.48	84.71
CDY42912	Canola	cytosol, mitochondrion	83.67	84.25
CDY70652	Canola	extracellular	83.67	84.25
CDY25423	Canola	cytosol	83.67	84.25
Bra040145.1-P	Field mustard	cytosol, mitochondrion	83.67	84.25
Bra001098.1-P	Field mustard	cytosol, mitochondrion	83.67	84.25
CDY61186	Canola	cytosol	68.03	83.33
KRH50326	Soybean	cytosol	88.44	83.33
KRH70668	Soybean	nucleus	88.44	83.33
GSMUA_Achr1P21580_001	Banana	cytosol	56.46	83.0
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	79.59	80.14
CDY24915	Canola	cytosol	77.55	77.55
GSMUA_Achr2P22080_001	Banana	cytosol	56.46	75.45
Os11t0127900-01	Rice	plastid	76.19	75.17
Os12t0124200-01	Rice	plastid	76.19	75.17
EES09177	Sorghum	mitochondrion	74.15	73.65
Zm00001d005023_P001	Maize	plasma membrane, plastid	74.15	73.65
Zm00001d044664_P001	Maize	plastid	74.15	73.15
EES15592	Sorghum	mitochondrion	74.15	73.15
TraesCS4A01G323600.1	Wheat	mitochondrion	74.15	72.67
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	73.47	72.48
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	73.47	72.48
TraesCS4A01G190500.1	Wheat	plastid	73.47	72.48
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	73.47	72.48
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	73.47	72.48
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	73.47	72.48
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	73.47	72.48
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	73.47	72.48
TraesCS5B01G141700.1	Wheat	golgi, unclear	73.47	72.48
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	73.47	72.48
Zm00001d023293_P001	Maize	plasma membrane	72.79	71.81
TraesCS5B01G554700.1	Wheat	cytosol	64.63	71.43
CDY25446	Canola	plastid	42.18	63.27
Bra025108.1-P	Field mustard	cytosol	51.7	60.8
HORVU5Hr1G045620.1	Barley	plastid	73.47	60.67
VIT_18s0001g14620.t01	Wine grape	cytosol	61.9	57.96
HORVU4Hr1G023570.2	Barley	mitochondrion	73.47	54.55
CDY53247	Canola	mitochondrion	38.78	37.75

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
InterPro:IPR014721	UniProt:K4BR52	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:Solyc04g026100.1
EnsemblPlants:Solyc04g026100.1.1	UniParc:UPI0002765E2A	:	:	:	:

Description

No Description!

Coordinates

chr4:-:18932622..18933065

Molecular Weight (calculated)

16652.5 Da

IEP (calculated)

10.832

GRAVY (calculated)

-0.393

Length

147 amino acids

Sequence
(BLAST)

001: MEAAAATAES VQCFGRKKTA VAVTHCKRGK GLIKINGVPI ELVQPEILRY KAYEPILLLG RHRFAGVDMR IRVKGGGHTS QIYAIRQSIA KALVAFYQKY
101: VDEQSKKEIK DILVRYDRTL LVADPRRCEP KKFGGRGARS RFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.