Factsheet for Bra025108.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25446	Canola	plastid	45.6	58.16
Bra006454.1-P	Field mustard	cytosol	64.0	54.79
Bra040207.1-P	Field mustard	mitochondrion	64.0	54.79
Bra040145.1-P	Field mustard	cytosol, mitochondrion	63.2	54.11
Bra001098.1-P	Field mustard	cytosol, mitochondrion	63.2	54.11
VIT_05s0020g02990.t01	Wine grape	cytosol	60.8	52.78
VIT_03s0063g00130.t01	Wine grape	cytosol	60.8	52.78
Solyc04g026100.1.1	Tomato	nucleus	60.8	51.7
PGSC0003DMT400077257	Potato	cytosol	60.8	51.7
PGSC0003DMT400010554	Potato	cytosol	60.0	51.02
Solyc05g005690.1.1	Tomato	nucleus	60.0	51.02
Solyc01g068530.2.1	Tomato	nucleus	60.0	50.0
KRH50326	Soybean	cytosol	60.0	48.08
KRH70668	Soybean	nucleus	60.0	48.08
KRH41748	Soybean	nucleus	59.2	47.74
TraesCS5B01G554700.1	Wheat	cytosol	50.4	47.37
KRH60450	Soybean	nucleus	59.2	47.13
GSMUA_Achr3P21350_001	Banana	cytosol	35.2	45.83
Os11t0127900-01	Rice	plastid	53.6	44.97
Os12t0124200-01	Rice	plastid	53.6	44.97
TraesCS4A01G323600.1	Wheat	mitochondrion	53.6	44.67
GSMUA_Achr6P10560_001	Banana	cytosol	34.4	44.33
EES09177	Sorghum	mitochondrion	52.0	43.92
Zm00001d044664_P001	Maize	plastid	52.0	43.62
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	52.0	43.62
TraesCS5B01G141700.1	Wheat	golgi, unclear	52.0	43.62
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	52.0	43.62
EES15592	Sorghum	mitochondrion	52.0	43.62
Zm00001d005023_P001	Maize	plasma membrane, plastid	51.2	43.24
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	51.2	42.95
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	51.2	42.95
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	51.2	42.95
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	51.2	42.95
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	51.2	42.95
TraesCS4A01G190500.1	Wheat	plastid	51.2	42.95
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	51.2	42.95
Zm00001d023293_P001	Maize	plasma membrane	50.4	42.28
GSMUA_Achr3P01630_001	Banana	cytosol	32.0	40.0
GSMUA_Achr7P11640_001	Banana	cytosol	27.2	36.56
HORVU5Hr1G045620.1	Barley	plastid	52.0	36.52
VIT_18s0001g14620.t01	Wine grape	cytosol	44.8	35.67
GSMUA_Achr1P21580_001	Banana	cytosol	26.4	33.0
HORVU4Hr1G023570.2	Barley	mitochondrion	51.2	32.32
GSMUA_Achr2P22080_001	Banana	cytosol	27.2	30.91

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EnsemblPlantsGene:Bra025108	EnsemblPlants:Bra025108.1	EnsemblPlants:Bra025108.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR014721	UniProt:M4E8K2	PFAM:PF00380	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	SUPFAM:SSF54211	UniParc:UPI000253F62E	:

Description

AT2G09990 (E=8e-038) | 40S ribosomal protein S16 (RPS16A)

Coordinates

chrA06:-:25204937..25205314

Molecular Weight (calculated)

14346.3 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.792

Length

125 amino acids

Sequence
(BLAST)

001: MLRKEEDSGG CHPLQTRMRS DQAQRLPDRA LQPLLLGKHR FASVDMRIRV KGGGHTSQVY TIRQSLAKAL VAFYQKYVDE QSKKDVKDIL IRYDRTLLVA
101: DPMRCEPKNF GGRGTNGRWN EVSKD

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.