Factsheet for TraesCS5B01G554700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G323600.1	Wheat	mitochondrion	96.24	85.33
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	87.22	77.85
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	87.22	77.85
TraesCS5B01G141700.1	Wheat	golgi, unclear	83.46	74.5
GSMUA_Achr3P21350_001	Banana	cytosol	51.88	71.88
GSMUA_Achr6P10560_001	Banana	cytosol	51.13	70.1
GSMUA_Achr3P01630_001	Banana	cytosol	52.63	70.0
Solyc05g005690.1.1	Tomato	nucleus	72.18	65.31
PGSC0003DMT400010554	Potato	cytosol	72.18	65.31
VIT_05s0020g02990.t01	Wine grape	cytosol	70.68	65.28
VIT_03s0063g00130.t01	Wine grape	cytosol	70.68	65.28
CDY21134	Canola	cytosol, mitochondrion	71.43	65.07
Solyc04g026100.1.1	Tomato	nucleus	71.43	64.63
PGSC0003DMT400077257	Potato	cytosol	71.43	64.63
CDY70652	Canola	extracellular	70.68	64.38
CDY49352	Canola	cytosol, mitochondrion	70.68	64.38
CDY42912	Canola	cytosol, mitochondrion	70.68	64.38
Bra040145.1-P	Field mustard	cytosol, mitochondrion	70.68	64.38
Bra001098.1-P	Field mustard	cytosol, mitochondrion	70.68	64.38
Solyc01g068530.2.1	Tomato	nucleus	72.18	64.0
AT2G09990.1	Thale cress	cytosol	69.92	63.7
CDY51232	Canola	cytosol	69.92	63.7
CDY29988	Canola	cytosol	69.92	63.7
CDX70812	Canola	cytosol	69.92	63.7
Bra040207.1-P	Field mustard	mitochondrion	69.92	63.7
Bra006454.1-P	Field mustard	cytosol	69.92	63.7
GSMUA_Achr7P11640_001	Banana	cytosol	44.36	63.44
AT5G18380.1	Thale cress	cytosol	69.17	63.01
CDY25423	Canola	cytosol	69.17	63.01
CDX92061	Canola	cytosol	69.17	63.01
GSMUA_Achr1P21580_001	Banana	cytosol	47.37	63.0
KRH41748	Soybean	nucleus	72.93	62.58
CDY61186	Canola	cytosol	55.64	61.67
KRH50326	Soybean	cytosol	72.18	61.54
KRH70668	Soybean	nucleus	72.18	61.54
KRH60450	Soybean	nucleus	72.18	61.15
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	66.17	60.27
GSMUA_Achr2P22080_001	Banana	cytosol	49.62	60.0
CDY24915	Canola	cytosol	63.16	57.14
CDY25446	Canola	plastid	39.1	53.06
Bra025108.1-P	Field mustard	cytosol	47.37	50.4
VIT_18s0001g14620.t01	Wine grape	cytosol	47.37	40.13
CDY53247	Canola	mitochondrion	34.59	30.46

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014721	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	EnsemblPlantsGene:TraesCS5B01G554700	EnsemblPlants:TraesCS5B01G554700.1	:	:

Description

No Description!

Coordinates

chr5B:-:704276486..704277064

Molecular Weight (calculated)

14568.1 Da

IEP (calculated)

10.956

GRAVY (calculated)

-0.262

Length

133 amino acids

Sequence
(BLAST)

001: MTAAVLARPT PGNVQCFGRK KTAVAVAHCK PGRGLIKALE PILLAGKSRF KGIDMRICVS GGGKVSQVYS IRQAIARALV AYNQKYVDEA AKKEVKEILG
101: RYDRTLLVAD PRCCEPKKFG GRGARARFQK SYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.