CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g00130.t01	Wine grape	cytosol	38.41	40.28
CDX70812	Canola	cytosol	37.75	39.04
CDY51232	Canola	cytosol	37.75	39.04
CDY49352	Canola	cytosol, mitochondrion	37.75	39.04
PGSC0003DMT400010554	Potato	cytosol	37.75	38.78
PGSC0003DMT400077257	Potato	cytosol	37.75	38.78
Solyc04g026100.1.1	Tomato	nucleus	37.75	38.78
Solyc05g005690.1.1	Tomato	nucleus	37.75	38.78
Solyc01g068530.2.1	Tomato	nucleus	38.41	38.67
CDY29988	Canola	cytosol	37.09	38.36
CDY42912	Canola	cytosol, mitochondrion	37.09	38.36
CDY21134	Canola	cytosol, mitochondrion	37.09	38.36
CDY70652	Canola	extracellular	37.09	38.36
CDX92061	Canola	cytosol	37.09	38.36
VIT_05s0020g02990.t01	Wine grape	cytosol	36.42	38.19
CDY25423	Canola	cytosol	35.76	36.99
AT5G18380.1	Thale cress	cytosol	35.76	36.99
CDY24915	Canola	cytosol	35.76	36.73
AT2G09990.1	Thale cress	cytosol	35.1	36.3
KRH70668	Soybean	nucleus	36.42	35.26
KRH50326	Soybean	cytosol	36.42	35.26
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	33.77	34.93
TraesCS5B01G554700.1	Wheat	cytosol	30.46	34.59
KRH60450	Soybean	nucleus	35.76	34.39
KRH41748	Soybean	nucleus	35.1	34.19
CDY61186	Canola	cytosol	27.15	34.17
VIT_18s0001g14620.t01	Wine grape	cytosol	33.77	32.48
TraesCS4A01G323600.1	Wheat	mitochondrion	31.79	32.0
Os11t0127900-01	Rice	plastid	29.8	30.2
Os12t0124200-01	Rice	plastid	29.8	30.2
TraesCS4A01G190500.1	Wheat	plastid	29.14	29.53
Zm00001d044664_P001	Maize	plastid	29.14	29.53
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	29.14	29.53
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	29.14	29.53
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	29.14	29.53
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	29.14	29.53
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	29.14	29.53
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	29.14	29.53
EES09177	Sorghum	mitochondrion	28.48	29.05
TraesCS5B01G141700.1	Wheat	golgi, unclear	28.48	28.86
Zm00001d023293_P001	Maize	plasma membrane	28.48	28.86
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	28.48	28.86
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	28.48	28.86
Zm00001d005023_P001	Maize	plasma membrane, plastid	27.81	28.38
EES15592	Sorghum	mitochondrion	27.81	28.19
CDY25446	Canola	plastid	17.88	27.55
HORVU5Hr1G045620.1	Barley	plastid	31.13	26.4
GSMUA_Achr3P21350_001	Banana	cytosol	15.89	25.0
GSMUA_Achr1P21580_001	Banana	cytosol	15.89	24.0
HORVU4Hr1G023570.2	Barley	mitochondrion	31.13	23.74
GSMUA_Achr3P01630_001	Banana	cytosol	15.23	23.0
GSMUA_Achr6P10560_001	Banana	cytosol	14.57	22.68
GSMUA_Achr7P11640_001	Banana	cytosol	13.24	21.51
GSMUA_Achr2P22080_001	Banana	cytosol	14.57	20.0

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.1	GO:A0A078ITB5	UniProt:A0A078ITB5	EnsemblPlants:CDY53247	ProteinID:CDY53247
ProteinID:CDY53247.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00010270001	InterPro:IPR014721
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF4	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI0004EEFA7D	:	:

Description

BnaA02g04070DBnaA02g04070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITB5]

Coordinates

chrLK033180:+:18366..20264

Molecular Weight (calculated)

16271.9 Da

IEP (calculated)

10.720

GRAVY (calculated)

0.003

Length

151 amino acids

Sequence
(BLAST)

001: MLLSLVYGKQ GTFTKLAKQG SDHAVTKRRS CFISGSRDPV LVKRHNGLNV SPKSVLPLET PLLSKRYASS TVVSVQCFGR KKTAVAFNGC PTVDQVLLLG
101: KHRFAGVDTR IRVKGGGHTS QVYAIRQSIA KALVAFVDVG LCVSTPDVTE E

Best Arabidopsis Sequence Match ( AT5G18380.3 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPVLLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRFFWEYG LVRLFRFYNF CFIMLVGLW

Arabidopsis Description

RPS16C40S ribosomal protein S16-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42340]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.