Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044664_P001 | Maize | plastid | 93.29 | 93.29 |
| Zm00001d005023_P001 | Maize | plasma membrane, plastid | 92.62 | 93.24 |
| EES15592 | Sorghum | mitochondrion | 91.95 | 91.95 |
| TraesCS5D01G149100.1 | Wheat | mitochondrion, plastid | 91.28 | 91.28 |
| TraesCS5B01G141700.1 | Wheat | golgi, unclear | 91.28 | 91.28 |
| TraesCS5A01G142900.1 | Wheat | mitochondrion, plastid | 91.28 | 91.28 |
| GSMUA_Achr3P21350_001 | Banana | cytosol | 50.34 | 78.12 |
| GSMUA_Achr6P10560_001 | Banana | cytosol | 50.34 | 77.32 |
| HORVU5Hr1G045620.1 | Barley | plastid | 91.28 | 76.4 |
| GSMUA_Achr3P01630_001 | Banana | cytosol | 51.01 | 76.0 |
| GSMUA_Achr7P11640_001 | Banana | cytosol | 46.98 | 75.27 |
| VIT_05s0020g02990.t01 | Wine grape | cytosol | 72.48 | 75.0 |
| VIT_03s0063g00130.t01 | Wine grape | cytosol | 72.48 | 75.0 |
| GSMUA_Achr1P21580_001 | Banana | cytosol | 49.66 | 74.0 |
| PGSC0003DMT400010554 | Potato | cytosol | 72.48 | 73.47 |
| Solyc05g005690.1.1 | Tomato | nucleus | 72.48 | 73.47 |
| PGSC0003DMT400077257 | Potato | cytosol | 71.81 | 72.79 |
| Solyc04g026100.1.1 | Tomato | nucleus | 71.81 | 72.79 |
| Solyc01g068530.2.1 | Tomato | nucleus | 71.81 | 71.33 |
| CDY42912 | Canola | cytosol, mitochondrion | 69.8 | 71.23 |
| CDY49352 | Canola | cytosol, mitochondrion | 69.8 | 71.23 |
| Bra040145.1-P | Field mustard | cytosol, mitochondrion | 69.8 | 71.23 |
| AT3G04230.1 | Thale cress | cytosol, mitochondrion, plastid | 69.13 | 70.55 |
| CDY51232 | Canola | cytosol | 69.13 | 70.55 |
| CDY29988 | Canola | cytosol | 69.13 | 70.55 |
| Bra006454.1-P | Field mustard | cytosol | 69.13 | 70.55 |
| Bra040207.1-P | Field mustard | mitochondrion | 69.13 | 70.55 |
| CDX70812 | Canola | cytosol | 69.13 | 70.55 |
| CDY21134 | Canola | cytosol, mitochondrion | 69.13 | 70.55 |
| KRH41748 | Soybean | nucleus | 73.15 | 70.32 |
| KRH50326 | Soybean | cytosol | 73.15 | 69.87 |
| KRH70668 | Soybean | nucleus | 73.15 | 69.87 |
| CDY70652 | Canola | extracellular | 68.46 | 69.86 |
| AT5G18380.1 | Thale cress | cytosol | 68.46 | 69.86 |
| Bra001098.1-P | Field mustard | cytosol, mitochondrion | 68.46 | 69.86 |
| KRH60450 | Soybean | nucleus | 73.15 | 69.43 |
| AT2G09990.1 | Thale cress | cytosol | 67.79 | 69.18 |
| CDY25423 | Canola | cytosol | 67.79 | 69.18 |
| CDY61186 | Canola | cytosol | 55.7 | 69.17 |
| CDX92061 | Canola | cytosol | 67.11 | 68.49 |
| GSMUA_Achr2P22080_001 | Banana | cytosol | 50.34 | 68.18 |
| CDY24915 | Canola | cytosol | 62.42 | 63.27 |
| CDY25446 | Canola | plastid | 34.23 | 52.04 |
| Bra025108.1-P | Field mustard | cytosol | 42.28 | 50.4 |
| VIT_18s0001g14620.t01 | Wine grape | cytosol | 49.66 | 47.13 |
| CDY53247 | Canola | mitochondrion | 28.86 | 28.48 |
Protein Annotations
| EntrezGene:100284613 | MapMan:17.1.3.1.18 | Gene3D:3.30.230.10 | ProteinID:AQK38861.1 | UniProt:B6TVN0 | EMBL:EU969045 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR014721 | PFAM:PF00380 | ScanProsite:PS00360 |
| PANTHER:PTHR21569 | PANTHER:PTHR21569:SF7 | InterPro:Ribosomal_S5_D2-typ_fold | InterPro:Ribosomal_S5_D2-typ_fold_subgr | InterPro:Ribosomal_S9 | InterPro:Ribosomal_S9_CS |
| SUPFAM:SSF54211 | UniParc:UPI000182E4EA | EnsemblPlantsGene:Zm00001d023293 | EnsemblPlants:Zm00001d023293_P001 | EnsemblPlants:Zm00001d023293_T001 | : |
Description
40S ribosomal protein S16
Coordinates
chr10:+:2239888..2240337
Molecular Weight (calculated)
16905.2 Da
IEP (calculated)
11.314
GRAVY (calculated)
-0.447
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPVLKRPTP GTVQCFGRKK TAVAVAYTKP GRGMIKVNGV PIELLRPEML RLKAMEPVLL AGRSRFKDID MRIRVRGGGK TSQIYAIRQA VAKGLVAYYQ
101: KYVDEAAKKE IKDIFMRYER TLLVADPRRC EPKKFGGRGA RARFQKSYR
101: KYVDEAAKKE IKDIFMRYER TLLVADPRRC EPKKFGGRGA RARFQKSYR
001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPVLLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR
Arabidopsis Description
RPS16C40S ribosomal protein S16-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42340]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.