Factsheet for Bra006454.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51232	Canola	cytosol	100.0	100.0
CDX70812	Canola	cytosol	100.0	100.0
Bra040145.1-P	Field mustard	cytosol, mitochondrion	97.26	97.26
Bra001098.1-P	Field mustard	cytosol, mitochondrion	96.58	96.58
Bra040207.1-P	Field mustard	mitochondrion	95.89	95.89
AT5G18380.1	Thale cress	cytosol	90.41	90.41
AT2G09990.1	Thale cress	cytosol	89.73	89.73
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	87.67	87.67
GSMUA_Achr6P10560_001	Banana	cytosol	56.85	85.57
Solyc05g005690.1.1	Tomato	nucleus	84.93	84.35
PGSC0003DMT400010554	Potato	cytosol	84.93	84.35
Solyc04g026100.1.1	Tomato	nucleus	84.93	84.35
PGSC0003DMT400077257	Potato	cytosol	84.93	84.35
VIT_05s0020g02990.t01	Wine grape	cytosol	82.88	84.03
VIT_03s0063g00130.t01	Wine grape	cytosol	82.19	83.33
GSMUA_Achr3P21350_001	Banana	cytosol	54.79	83.33
Solyc01g068530.2.1	Tomato	nucleus	84.93	82.67
GSMUA_Achr7P11640_001	Banana	cytosol	50.68	79.57
KRH50326	Soybean	cytosol	84.93	79.49
KRH70668	Soybean	nucleus	84.93	79.49
KRH60450	Soybean	nucleus	84.25	78.34
KRH41748	Soybean	nucleus	82.88	78.06
GSMUA_Achr3P01630_001	Banana	cytosol	53.42	78.0
GSMUA_Achr1P21580_001	Banana	cytosol	51.37	75.0
Os11t0127900-01	Rice	plastid	74.66	73.15
Os12t0124200-01	Rice	plastid	74.66	73.15
TraesCS4A01G323600.1	Wheat	mitochondrion	72.6	70.67
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	71.92	70.47
EES15592	Sorghum	mitochondrion	71.92	70.47
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	71.92	70.47
TraesCS4A01G190500.1	Wheat	plastid	71.92	70.47
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	71.92	70.47
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	71.92	70.47
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	71.92	70.47
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	71.92	70.47
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	71.92	70.47
TraesCS5B01G141700.1	Wheat	golgi, unclear	71.92	70.47
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	71.92	70.47
EES09177	Sorghum	mitochondrion	71.23	70.27
GSMUA_Achr2P22080_001	Banana	cytosol	52.74	70.0
TraesCS5B01G554700.1	Wheat	cytosol	63.7	69.92
Zm00001d044664_P001	Maize	plastid	71.23	69.8
Zm00001d023293_P001	Maize	plasma membrane	70.55	69.13
Zm00001d005023_P001	Maize	plasma membrane, plastid	69.86	68.92
Bra025108.1-P	Field mustard	cytosol	54.79	64.0
HORVU5Hr1G045620.1	Barley	plastid	71.92	58.99
HORVU4Hr1G023570.2	Barley	mitochondrion	71.92	53.03
VIT_18s0001g14620.t01	Wine grape	cytosol	55.48	51.59

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	EnsemblPlantsGene:Bra006454	EnsemblPlants:Bra006454.1	EnsemblPlants:Bra006454.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	UniProt:M4CQG5	PFAM:PF00380	ScanProsite:PS00360
PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS
SUPFAM:SSF54211	UniParc:UPI0001BA8ECE	:	:	:	:

Description

AT5G18380 (E=2e-073) | 40S ribosomal protein S16 (RPS16C)

Coordinates

chrA03:-:3563490..3563930

Molecular Weight (calculated)

16546.5 Da

IEP (calculated)

10.940

GRAVY (calculated)

-0.371

Length

146 amino acids

Sequence
(BLAST)

001: MATQAAKQSV QCFGRKKTAV AVTHCKPGCG MIKLNGSPIE LFNPEILRFK IFEPVLLLGK HRFAGVDMRI RVKGGGHTSQ VYAIRQSIAK ALVAFYQKYV
101: DEQSKKEVKD ILIRYDRTLL VADPRRCEPK KFGGRGARSR FQKSYR

Best Arabidopsis Sequence Match ( AT5G18380.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPVLLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16C40S ribosomal protein S16-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42340]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.