Factsheet for VIT_03s0063g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
mitochondrion 2
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02990.t01	Wine grape	cytosol	96.53	96.53
PGSC0003DMT400077257	Potato	cytosol	93.06	91.16
Solyc04g026100.1.1	Tomato	nucleus	93.06	91.16
Solyc05g005690.1.1	Tomato	nucleus	91.67	89.8
PGSC0003DMT400010554	Potato	cytosol	91.67	89.8
Solyc01g068530.2.1	Tomato	nucleus	92.36	88.67
GSMUA_Achr7P11640_001	Banana	cytosol	56.94	88.17
KRH41748	Soybean	nucleus	94.44	87.74
GSMUA_Achr3P21350_001	Banana	cytosol	58.33	87.5
KRH60450	Soybean	nucleus	93.75	85.99
KRH50326	Soybean	cytosol	93.06	85.9
KRH70668	Soybean	nucleus	93.06	85.9
GSMUA_Achr6P10560_001	Banana	cytosol	57.64	85.57
AT2G09990.1	Thale cress	cytosol	85.42	84.25
GSMUA_Achr3P01630_001	Banana	cytosol	58.33	84.0
CDX92061	Canola	cytosol	84.72	83.56
AT5G18380.1	Thale cress	cytosol	84.72	83.56
CDY70652	Canola	extracellular	84.03	82.88
CDY29988	Canola	cytosol	84.03	82.88
CDY51232	Canola	cytosol	83.33	82.19
CDX70812	Canola	cytosol	83.33	82.19
Bra006454.1-P	Field mustard	cytosol	83.33	82.19
Bra001098.1-P	Field mustard	cytosol, mitochondrion	83.33	82.19
CDY49352	Canola	cytosol, mitochondrion	83.33	82.19
CDY25423	Canola	cytosol	83.33	82.19
CDY21134	Canola	cytosol, mitochondrion	83.33	82.19
CDY42912	Canola	cytosol, mitochondrion	82.64	81.51
Bra040145.1-P	Field mustard	cytosol, mitochondrion	82.64	81.51
Bra040207.1-P	Field mustard	mitochondrion	82.64	81.51
GSMUA_Achr1P21580_001	Banana	cytosol	56.25	81.0
CDY61186	Canola	cytosol	67.36	80.83
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	81.25	80.14
Os11t0127900-01	Rice	plastid	79.86	77.18
Os12t0124200-01	Rice	plastid	79.86	77.18
CDY24915	Canola	cytosol	77.78	76.19
GSMUA_Achr2P22080_001	Banana	cytosol	56.94	74.55
EES09177	Sorghum	mitochondrion	76.39	74.32
Zm00001d005023_P001	Maize	plasma membrane, plastid	76.39	74.32
TraesCS4D01G123000.1	Wheat	golgi, nucleus, unclear	76.39	73.83
TraesCS5A01G142900.1	Wheat	mitochondrion, plastid	76.39	73.83
TraesCS5B01G141700.1	Wheat	golgi, unclear	76.39	73.83
TraesCS5D01G149100.1	Wheat	mitochondrion, plastid	76.39	73.83
Zm00001d044664_P001	Maize	plastid	76.39	73.83
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	76.39	73.83
TraesCS4B01G129600.1	Wheat	mitochondrion, plastid	76.39	73.83
TraesCS4B01G129400.1	Wheat	mitochondrion, plastid	76.39	73.83
TraesCS4A01G190500.1	Wheat	plastid	76.39	73.83
TraesCS4A01G190200.1	Wheat	mitochondrion, plastid	76.39	73.83
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	76.39	73.83
EES15592	Sorghum	mitochondrion	76.39	73.83
Zm00001d023293_P001	Maize	plasma membrane	75.0	72.48
TraesCS4A01G323600.1	Wheat	mitochondrion	75.0	72.0
TraesCS5B01G554700.1	Wheat	cytosol	65.28	70.68
VIT_18s0001g14620.t01	Wine grape	cytosol	68.75	63.06
CDY25446	Canola	plastid	42.36	62.24
HORVU5Hr1G045620.1	Barley	plastid	76.39	61.8
Bra025108.1-P	Field mustard	cytosol	52.78	60.8
HORVU4Hr1G023570.2	Barley	mitochondrion	76.39	55.56
CDY53247	Canola	mitochondrion	40.28	38.41

Protein Annotations

EntrezGene:100250286	wikigene:100250286	MapMan:17.1.3.1.18	Gene3D:3.30.230.10	UniProt:A5BX24	EMBL:AM474275
ProteinID:CAN72805	ProteinID:CAN72805.1	ProteinID:CCB56848	ProteinID:CCB56848.1	EMBL:FN596006	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR014721	EntrezGene:LOC100250286	wikigene:LOC100250286
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	TIGR:TC60523	UniParc:UPI0001521CF6	ArrayExpress:VIT_03s0063g00130
EnsemblPlantsGene:VIT_03s0063g00130	EnsemblPlants:VIT_03s0063g00130.t01	unigene:Vvi.7745	RefSeq:XP_002285101	RefSeq:XP_002285101.1	:

Description

No Description!

Coordinates

chr3:-:3718049..3718720

Molecular Weight (calculated)

16400.3 Da

IEP (calculated)

10.787

GRAVY (calculated)

-0.356

Length

144 amino acids

Sequence
(BLAST)

001: MASPVESVQC FGRKKTAVAV TYCKRGRGLI KINGCPIELV EPEILRYKAV EPILLLGRHR FAGVDMRIRV KGGGHTSQIY AIRQSIAKAL VAFYQKYVDE
101: QSKKEIKDIL VRYDRTLLVA DPRRCEPKKF GGRGARARFQ KSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.