Factsheet for HORVU4Hr1G023570.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G023530.1	Barley	mitochondrion, plastid	75.25	100.0
TraesCS4D01G122900.1	Wheat	mitochondrion, plastid	75.25	100.0
TraesCS4A01G190500.1	Wheat	plastid	74.75	99.33
Os12t0124200-01	Rice	plastid	70.71	93.96
Os11t0127900-01	Rice	plastid	70.71	93.96
HORVU5Hr1G045620.1	Barley	plastid	73.74	82.02
GSMUA_Achr6P10560_001	Banana	cytosol	38.38	78.35
GSMUA_Achr3P21350_001	Banana	cytosol	37.88	78.12
VIT_05s0020g02990.t01	Wine grape	cytosol	56.06	77.08
GSMUA_Achr3P01630_001	Banana	cytosol	38.89	77.0
VIT_03s0063g00130.t01	Wine grape	cytosol	55.56	76.39
GSMUA_Achr7P11640_001	Banana	cytosol	35.35	75.27
GSMUA_Achr1P21580_001	Banana	cytosol	37.88	75.0
Solyc05g005690.1.1	Tomato	nucleus	55.56	74.83
PGSC0003DMT400010554	Potato	cytosol	55.56	74.83
KRH41748	Soybean	nucleus	57.58	73.55
PGSC0003DMT400077257	Potato	cytosol	54.55	73.47
Solyc04g026100.1.1	Tomato	nucleus	54.55	73.47
CDY21134	Canola	cytosol, mitochondrion	54.04	73.29
Solyc01g068530.2.1	Tomato	nucleus	55.05	72.67
CDY70652	Canola	extracellular	53.54	72.6
CDY42912	Canola	cytosol, mitochondrion	53.54	72.6
Bra001098.1-P	Field mustard	cytosol, mitochondrion	53.54	72.6
Bra040145.1-P	Field mustard	cytosol, mitochondrion	53.54	72.6
AT2G09990.1	Thale cress	cytosol	53.03	71.92
CDY51232	Canola	cytosol	53.03	71.92
CDY49352	Canola	cytosol, mitochondrion	53.03	71.92
CDY29988	Canola	cytosol	53.03	71.92
CDX70812	Canola	cytosol	53.03	71.92
Bra006454.1-P	Field mustard	cytosol	53.03	71.92
CDY61186	Canola	cytosol	43.43	71.67
KRH60450	Soybean	nucleus	56.57	71.34
CDY25423	Canola	cytosol	52.53	71.23
CDX92061	Canola	cytosol	52.53	71.23
AT5G18380.1	Thale cress	cytosol	52.53	71.23
Bra040207.1-P	Field mustard	mitochondrion	52.53	71.23
KRH50326	Soybean	cytosol	56.06	71.15
KRH70668	Soybean	nucleus	56.06	71.15
GSMUA_Achr2P22080_001	Banana	cytosol	39.39	70.91
AT3G04230.1	Thale cress	cytosol, mitochondrion, plastid	51.52	69.86
CDY24915	Canola	cytosol	48.99	65.99
CDY25446	Canola	plastid	26.77	54.08
Bra025108.1-P	Field mustard	cytosol	32.32	51.2
VIT_18s0001g14620.t01	Wine grape	cytosol	38.38	48.41
CDY53247	Canola	mitochondrion	23.74	31.13

Protein Annotations

MapMan:17.1.3.1.18	Gene3D:3.30.230.10	UniProt:A0A287NJC7	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G023570
EnsemblPlants:HORVU4Hr1G023570.2	InterPro:IPR014721	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF7
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI000B47CD23
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:129094028..129096697

Molecular Weight (calculated)

22128.0 Da

IEP (calculated)

11.480

GRAVY (calculated)

-0.541

Length

198 amino acids

Sequence
(BLAST)

001: RRYINDLSSS SSRLRAAAQN PDPRRRAAEH TATKHTAALT ATKQTAATTM AAVLTRPTPG TVQCFGRKKT AVAVAYCKPG RGLIKVNGAP IELIRPEMLR
101: LKAFEPILLA GRSRFKDIDM RIRVRGGGKT SQIYSIRQAI AKSLVAYYQK YVDEAAKKEV KEIFGRYDRT LLVADPRRCE PKKFGGRGAR ARFQKSYR

Best Arabidopsis Sequence Match ( AT2G09990.1 )
(BLAST)

001: MATQPATESV QCFGRKKTAV AVTHCKRGSG LIKLNGCPIE LFQPEILRFK IFEPILLLGK HRFAGVNMRI RVNGGGHTSQ VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILVRYDRTLL VADPRRCEPK KFGGRGARSR YQKSYR

Arabidopsis Description

RPS16A40S ribosomal protein S16-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.