Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032150.1-P | Field mustard | endoplasmic reticulum, vacuole | 64.01 | 92.16 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 50.58 | 78.79 |
| CDX83143 | Canola | cytosol | 41.05 | 65.94 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 42.61 | 58.09 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 42.02 | 56.69 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 41.63 | 56.17 |
| CDY34004 | Canola | cytosol | 32.1 | 55.0 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 40.47 | 54.88 |
| CDY43081 | Canola | extracellular, vacuole | 40.08 | 53.93 |
| CDY50084 | Canola | extracellular, vacuole | 39.49 | 53.14 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 42.22 | 49.32 |
| CDY29822 | Canola | vacuole | 38.52 | 49.13 |
| CDX82249 | Canola | plasma membrane, vacuole | 36.19 | 48.56 |
| CDX82251 | Canola | extracellular, golgi | 37.35 | 48.12 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 34.82 | 47.73 |
| CDY25415 | Canola | vacuole | 36.77 | 46.78 |
| CDY36041 | Canola | plasma membrane | 32.1 | 46.35 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 34.63 | 46.23 |
| CDX82252 | Canola | plastid | 31.91 | 45.68 |
| CDY70350 | Canola | plastid | 14.79 | 44.44 |
| CDY04288 | Canola | cytosol | 12.06 | 44.29 |
| CDY36040 | Canola | extracellular | 32.49 | 44.18 |
| CDY70349 | Canola | cytosol | 20.82 | 40.53 |
| CDY07338 | Canola | plastid | 22.57 | 38.41 |
| CDY04290 | Canola | extracellular | 18.87 | 37.74 |
| CDX99123 | Canola | cytosol | 14.01 | 37.5 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 22.37 | 37.34 |
| CDY44083 | Canola | cytosol | 22.57 | 36.83 |
| CDY57407 | Canola | cytosol | 21.98 | 36.45 |
| CDY04283 | Canola | plastid | 21.6 | 34.8 |
| CDY39500 | Canola | cytosol | 21.6 | 34.69 |
| CDY07340 | Canola | plastid | 21.21 | 34.17 |
| CDY28571 | Canola | cytosol | 14.98 | 34.07 |
| CDY28575 | Canola | golgi | 20.04 | 33.77 |
| CDX95908 | Canola | plastid | 23.54 | 33.06 |
| CDX74582 | Canola | extracellular, golgi, plastid | 23.74 | 32.62 |
| CDX81648 | Canola | plastid | 17.9 | 32.17 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 21.98 | 30.46 |
| CDY44084 | Canola | cytosol | 24.71 | 30.09 |
| KRH68153 | Soybean | cytosol | 17.9 | 29.49 |
| CDY19307 | Canola | cytosol | 21.79 | 28.87 |
| CDX82371 | Canola | cytosol | 16.93 | 28.16 |
| CDX75913 | Canola | cytosol | 16.54 | 27.51 |
| CDX88229 | Canola | extracellular | 18.29 | 26.86 |
| CDX87055 | Canola | golgi, plasma membrane | 17.32 | 26.73 |
| CDY46265 | Canola | plasma membrane | 24.32 | 26.6 |
| CDY67361 | Canola | vacuole | 18.09 | 26.57 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 18.09 | 26.57 |
| CDX86065 | Canola | cytosol | 16.15 | 26.35 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 17.7 | 26.3 |
| CDX80557 | Canola | extracellular | 17.9 | 26.29 |
| CDX87054 | Canola | extracellular | 17.9 | 26.29 |
| CDY19775 | Canola | extracellular | 17.9 | 26.29 |
| CDY19777 | Canola | extracellular | 17.51 | 26.16 |
| CDY29329 | Canola | plasma membrane | 23.93 | 26.11 |
| CDX87056 | Canola | extracellular | 17.32 | 25.95 |
| CDY05532 | Canola | extracellular | 17.7 | 25.93 |
| CDY24977 | Canola | extracellular | 17.7 | 25.93 |
| CDY05531 | Canola | cytosol | 14.79 | 25.42 |
| CDY05324 | Canola | cytosol | 14.4 | 24.67 |
| CDX91854 | Canola | cytosol | 14.2 | 24.58 |
| CDX74378 | Canola | cytosol | 13.42 | 24.04 |
| CDY70520 | Canola | vacuole | 15.37 | 23.8 |
| CDY36039 | Canola | vacuole | 39.49 | 22.04 |
| CDY07146 | Canola | cytosol | 12.65 | 22.03 |
| CDX81956 | Canola | extracellular | 13.04 | 21.82 |
| CDY37377 | Canola | cytosol, plastid | 20.62 | 21.63 |
| CDX84705 | Canola | cytosol | 12.84 | 21.57 |
| CDY51713 | Canola | cytosol | 12.26 | 21.36 |
| CDX79503 | Canola | cytosol | 12.45 | 20.98 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 7.59 | 19.7 |
| CDY48522 | Canola | cytosol | 10.51 | 19.35 |
| CDY07196 | Canola | cytosol | 11.09 | 19.19 |
| CDY23783 | Canola | cytosol | 11.28 | 18.83 |
| CDY12160 | Canola | cytosol | 10.89 | 18.01 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 9.14 | 16.32 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EnsemblPlants:CDX89595 | ProteinID:CDX89595 | ProteinID:CDX89595.1 | InterPro:DUF547 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00149944001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFAM:PF04784 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| SMART:SM00061 | SUPFAM:SSF49599 | SignalP:SignalP-TM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI0004EAE87F |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g36140D
Coordinates
chrLK031859:-:1519752..1524364
Molecular Weight (calculated)
59302.1 Da
IEP (calculated)
8.180
GRAVY (calculated)
-0.384
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNHYRTTIS ISLAYLFLCL FITYVSSQSL IRQITDDFNT NLKEEEPYVQ KHQEISSRHY NVSHSKTVTG MRDRRPSTYS YKIETNVVDK FETRPFTVGG
101: YNWILHVYLN GNTKDGGAGY VSLYVEIDKS GFVDSAHQEV YADLRFYIFN RNERKYFTIQ DTDVWRFDAF NTMWGFSKVL PVDTFKDPKN GYLYNGEHCE
201: FGVDVIVPTP FEESEIFSIS SSSDKYTWTI QNFSTLFKDV YSPVISLGGK KWILLVAPDG SGSGRGKYVS MFLQLYTNQR RAYEYIYVRA MFRVLNQQKL
301: SNREGELRNW YGRTYSWGIV DLISFDDLRD SSKGFLVDDT LMVEVQLEAI STTNISSNSS CCALASSALF GLSNSTTWVS RICQIHNHSN FAARWVKFWV
401: FVEELQWLKL LLIPRKFRTG DEHQEYSLDH SERLLYFALC SGNHSDPAVR VYTPNSQGNL PEASLTKNHC LNFSKDSGLS QVALMEMIQK CLPETMKKLT
501: KKLNSGRSRK STAE
101: YNWILHVYLN GNTKDGGAGY VSLYVEIDKS GFVDSAHQEV YADLRFYIFN RNERKYFTIQ DTDVWRFDAF NTMWGFSKVL PVDTFKDPKN GYLYNGEHCE
201: FGVDVIVPTP FEESEIFSIS SSSDKYTWTI QNFSTLFKDV YSPVISLGGK KWILLVAPDG SGSGRGKYVS MFLQLYTNQR RAYEYIYVRA MFRVLNQQKL
301: SNREGELRNW YGRTYSWGIV DLISFDDLRD SSKGFLVDDT LMVEVQLEAI STTNISSNSS CCALASSALF GLSNSTTWVS RICQIHNHSN FAARWVKFWV
401: FVEELQWLKL LLIPRKFRTG DEHQEYSLDH SERLLYFALC SGNHSDPAVR VYTPNSQGNL PEASLTKNHC LNFSKDSGLS QVALMEMIQK CLPETMKKLT
501: KKLNSGRSRK STAE
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.