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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009894.1-P Field mustard cytosol 72.29 99.22
CDY67361 Canola vacuole 96.86 96.86
CDY70520 Canola vacuole 86.0 90.66
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 89.43 89.43
CDX80557 Canola extracellular 88.86 88.86
CDX87054 Canola extracellular 86.86 86.86
CDY24977 Canola extracellular 86.86 86.61
CDY05532 Canola extracellular 86.86 86.61
CDY19775 Canola extracellular 86.0 86.0
CDX81956 Canola extracellular 74.29 84.69
CDY05531 Canola cytosol 72.0 84.28
CDY05324 Canola cytosol 68.29 79.67
AT5G26320.1 Thale cress vacuole 71.43 71.02
CDX87056 Canola extracellular 68.86 70.26
CDY19777 Canola extracellular 68.86 70.06
CDX87055 Canola golgi, plasma membrane 66.29 69.67
CDY19776 Canola extracellular, plasma membrane, vacuole 67.14 67.92
CDY04288 Canola cytosol 14.0 35.0
CDY70350 Canola plastid 15.71 32.16
CDY70349 Canola cytosol 22.86 30.3
CDX99123 Canola cytosol 16.57 30.21
KRH68153 Soybean cytosol 26.86 30.13
CDY44083 Canola cytosol 26.86 29.84
CDY43081 Canola extracellular, vacuole 32.29 29.58
CDY04290 Canola extracellular 21.71 29.57
CDX75913 Canola cytosol 26.0 29.45
CDX82371 Canola cytosol 26.0 29.45
CDY50084 Canola extracellular, vacuole 32.0 29.32
CDX82246 Canola endoplasmic reticulum, extracellular 31.43 29.18
CDX83143 Canola cytosol 26.29 28.75
CDY43080 Canola endoplasmic reticulum, vacuole 31.14 28.61
CDY50083 Canola endoplasmic reticulum, vacuole 30.86 28.35
CDY07338 Canola plastid 23.71 27.48
CDY58708 Canola cytosol, nucleus, plastid 24.0 27.27
CDY39500 Canola cytosol 24.86 27.19
CDY28571 Canola cytosol 17.43 26.99
CDX82252 Canola plastid 27.43 26.74
CDY36041 Canola plasma membrane 27.14 26.69
CDX82249 Canola plasma membrane, vacuole 29.14 26.63
CDY07146 Canola cytosol 22.29 26.44
CDY23783 Canola cytosol 23.14 26.3
CDY04283 Canola plastid 23.71 26.02
CDY28575 Canola golgi 22.57 25.9
CDX82251 Canola extracellular, golgi 29.43 25.81
CDY57407 Canola cytosol 22.86 25.81
CDY50282 Canola endoplasmic reticulum, vacuole 28.29 25.71
CDX95908 Canola plastid 26.86 25.68
CDX82248 Canola endoplasmic reticulum, vacuole 32.29 25.68
CDY36040 Canola extracellular 27.71 25.66
CDY51713 Canola cytosol 21.43 25.42
CDY07340 Canola plastid 23.14 25.39
CDX91854 Canola cytosol 21.43 25.25
CDY25415 Canola vacuole 29.14 25.25
CDX74378 Canola cytosol 20.57 25.09
CDY29822 Canola vacuole 28.86 25.06
CDX81648 Canola plastid 20.29 24.83
CDY12160 Canola cytosol 22.0 24.76
CDY60616 Canola cytosol, mitochondrion, plastid 19.71 23.96
CDX84705 Canola cytosol 20.86 23.86
CDX79503 Canola cytosol 20.57 23.61
CDX74582 Canola extracellular, golgi, plastid 24.86 23.26
CDY34004 Canola cytosol 19.71 23.0
CDY39666 Canola endoplasmic reticulum, vacuole 20.86 22.12
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 23.43 22.1
CDY19307 Canola cytosol 24.29 21.91
CDX91855 Canola extracellular, plasma membrane, vacuole 12.29 21.72
CDY07196 Canola cytosol 18.0 21.21
CDX86065 Canola cytosol 18.86 20.95
CDY44084 Canola cytosol 25.14 20.85
CDY48522 Canola cytosol 16.29 20.43
CDY46265 Canola plasma membrane 24.57 18.3
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 26.86 18.29
CDY29329 Canola plasma membrane 24.0 17.83
CDY37377 Canola cytosol, plastid 23.71 16.94
CDY36039 Canola vacuole 29.43 11.18
Protein Annotations
EnsemblPlants:CDX88229EnsemblPlantsGene:GSBRNA2T00147705001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF214
PFAM:PF00917PFscan:PS50144ProteinID:CDX88229ProteinID:CDX88229.1SignalP:SignalP-noTMSMART:SM00061
SUPFAM:SSF49599UniParc:UPI0004EF159AMapMan:35.2:::
Description
BnaA06g28200D
Coordinates
chrLK031854:+:1494904..1496937
Molecular Weight (calculated)
39406.8 Da
IEP (calculated)
9.712
GRAVY (calculated)
-0.265
Length
350 amino acids
Sequence
(BLAST)
001: MDFQKRSLGF LSLAFLFITG SSAEYLIHQV TESKGTESNS SYSLQSNLGV TRVWRDDRPS SKIVTIAGYS VIKGRGEPYE PSVFEAAGYK WRLVLYVTGN
101: KNDGGNGYIS LYVRMEETES LRYGWEVNVD LKLFVHNPKQ HKYLTVTDGA VKRFNAAKKE WGFGQLISLA TFENTNQGYI VQDTCSFGAE ILIVKPANQQ
201: EKVTFISNPP NNVFTWKILR FSNLEDKFYY SADFLVGDRY WRLGFNPKGS GGGRPHALPI FLYAQGFRPN AVATNTWGAV NLRLKNQRSS NHRQLYSAAW
301: YPIRSGYGVG VNNIILMADL KDTSKGYLVN DAIIFEAEMV KVSVTNIVPV
Best Arabidopsis Sequence Match ( AT5G26280.3 )
(BLAST)
001: MSLCLYKCTL FPNKTISQNM NNQKWSIGFI SLAFLFITSS SAEFIIQQVT KGRGIEYNSS YSLEENLGVT RELREERPSS KIVTITSFSV IKGRGEPYES
101: SVFEAAGYKW RLVLYVNGNK NDGGNDHISL YARIEETNSL PLGWEVNVDL KLFVHNGKLH KYLTVTDGLV KRYNNAKKEW GFGQLIPRST FYNANEGYLD
201: QDTGSFGAEI FIVKPAQQQE KVTFISNPPN NVFTWKILRF STLEDKFYYS DDFLVEDRYW RLGFNPKGDG GGRPHALPIF LFAQGHKANA VATNTWGAVN
301: LRLKNQRSTN HRQIYSAAWY PIGSGYGVGV NNIILLADLN DASKGYLVND AIIFEAEMVK VSITNIVSA
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.