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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04288 Canola cytosol 54.39 66.43
CDX81648 Canola plastid 81.87 48.95
CDY07338 Canola plastid 72.51 41.06
CDY70349 Canola cytosol 61.4 39.77
CDY04290 Canola extracellular 58.48 38.91
CDY44083 Canola cytosol 71.34 38.73
CDY58708 Canola cytosol, nucleus, plastid 69.01 38.31
CDY07340 Canola plastid 67.84 36.36
CDY04283 Canola plastid 67.84 36.36
Bra004405.1-P Field mustard plastid 76.02 35.52
CDX95908 Canola plastid 76.02 35.52
CDY57407 Canola cytosol 59.06 32.58
CDY28575 Canola golgi 54.39 30.49
CDY39500 Canola cytosol 56.14 30.0
CDY44084 Canola cytosol 68.42 27.73
CDY28571 Canola cytosol 35.67 26.99
CDY19307 Canola cytosol 56.14 24.74
CDX83143 Canola cytosol 42.69 22.81
CDX82246 Canola endoplasmic reticulum, extracellular 47.37 21.49
CDY36041 Canola plasma membrane 43.86 21.07
CDX82252 Canola plastid 43.27 20.61
CDY43080 Canola endoplasmic reticulum, vacuole 45.61 20.47
CDY50083 Canola endoplasmic reticulum, vacuole 45.61 20.47
CDY43081 Canola extracellular, vacuole 44.44 19.9
CDX82249 Canola plasma membrane, vacuole 43.86 19.58
CDY50084 Canola extracellular, vacuole 43.27 19.37
CDX82251 Canola extracellular, golgi 45.03 19.3
CDY37377 Canola cytosol, plastid 54.97 19.18
CDY25415 Canola vacuole 44.44 18.81
CDY29822 Canola vacuole 43.86 18.61
KRH68153 Soybean cytosol 33.92 18.59
CDY36040 Canola extracellular 40.94 18.52
CDX82248 Canola endoplasmic reticulum, vacuole 46.78 18.18
CDY50282 Canola endoplasmic reticulum, vacuole 39.18 17.4
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 36.84 16.98
CDY34004 Canola cytosol 29.24 16.67
CDX87055 Canola golgi, plasma membrane 32.16 16.52
CDX75913 Canola cytosol 29.82 16.5
CDY67361 Canola vacuole 33.33 16.29
CDX82371 Canola cytosol 29.24 16.18
CDY05531 Canola cytosol 28.07 16.05
CDY24977 Canola extracellular 32.75 15.95
CDX74582 Canola extracellular, golgi, plastid 34.5 15.78
CDX87056 Canola extracellular 31.58 15.74
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 32.16 15.71
CDX80557 Canola extracellular 32.16 15.71
CDX88229 Canola extracellular 32.16 15.71
CDY19777 Canola extracellular 31.58 15.7
CDY05532 Canola extracellular 32.16 15.67
CDY05324 Canola cytosol 27.49 15.67
CDY19776 Canola extracellular, plasma membrane, vacuole 31.58 15.61
CDX87054 Canola extracellular 31.58 15.43
CDY19775 Canola extracellular 31.58 15.43
CDX99123 Canola cytosol 16.96 15.1
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 44.44 14.79
CDX81956 Canola extracellular 25.15 14.01
CDX74378 Canola cytosol 23.39 13.94
CDY70520 Canola vacuole 26.9 13.86
CDX91854 Canola cytosol 23.39 13.47
CDY39666 Canola endoplasmic reticulum, vacuole 25.15 13.03
CDY46265 Canola plasma membrane 35.09 12.77
CDY29329 Canola plasma membrane 35.09 12.74
CDY07146 Canola cytosol 21.05 12.2
CDY51713 Canola cytosol 20.47 11.86
CDX86065 Canola cytosol 19.88 10.79
CDY48522 Canola cytosol 16.96 10.39
CDY07196 Canola cytosol 16.37 9.43
CDX84705 Canola cytosol 15.79 8.82
CDX79503 Canola cytosol 15.2 8.52
CDY36039 Canola vacuole 44.44 8.25
CDY60616 Canola cytosol, mitochondrion, plastid 13.45 7.99
CDY23783 Canola cytosol 14.04 7.79
CDY12160 Canola cytosol 12.28 6.75
CDX91855 Canola extracellular, plasma membrane, vacuole 6.43 5.56
Protein Annotations
EnsemblPlants:CDY70350EnsemblPlantsGene:GSBRNA2T00098211001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY70350ProteinID:CDY70350.1SUPFAM:SSF49599UniParc:UPI0004EE2B21
UniProt:A0A078JV99MapMan:35.2::::
Description
BnaCnng67940DBnaCnng67940D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JV99]
Coordinates
chrLK041849:+:2345..3359
Molecular Weight (calculated)
19622.2 Da
IEP (calculated)
8.921
GRAVY (calculated)
-0.340
Length
171 amino acids
Sequence
(BLAST)
001: MGSRSAVSTI NSTAFSDHKF QSRKFSSGGY KWRLIVYPKG NQKDNGSGFI SMYVEIDSKS LMVFTPPTEI FAELRFFVYN KKENKYFTIQ DVEVKRFNAL
101: RTVWGLVQVL PYDTFNNPEN GYVFEGGQCE FGVDVIVAPS LTNWEIHSFN EKFSGPKFSW ALKNFSELNV N
Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)
001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.