Factsheet for Bra004405.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95908	Canola	plastid	98.09	98.09
CDY70350	Canola	plastid	35.52	76.02
Bra007873.1-P	Field mustard	cytosol	59.56	69.21
CDX81648	Canola	plastid	52.73	67.48
Bra003989.1-P	Field mustard	plastid	52.73	66.55
Bra003990.1-P	Field mustard	plastid	50.0	61.0
Bra031322.1-P	Field mustard	cytosol, plastid	44.81	52.9
Bra023852.1-P	Field mustard	cytosol	44.54	50.94
Bra034175.1-P	Field mustard	cytosol, plastid	40.16	44.01
Bra007874.1-P	Field mustard	cytosol	46.72	42.75
Bra001785.1-P	Field mustard	nucleus	31.69	41.13
Bra000640.1-P	Field mustard	cytosol	34.97	40.0
Bra040904.1-P	Field mustard	extracellular, vacuole	37.16	35.6
Bra040903.1-P	Field mustard	extracellular, vacuole	35.79	34.29
Bra001786.1-P	Field mustard	extracellular, golgi	36.34	33.33
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	31.97	32.77
Bra035787.1-P	Field mustard	vacuole	36.07	32.67
Bra003837.1-P	Field mustard	cytosol	28.96	31.45
KRH68153	Soybean	cytosol	26.78	31.41
Bra001660.1-P	Field mustard	cytosol	24.32	31.01
Bra009894.1-P	Field mustard	cytosol	21.31	30.59
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	31.69	30.37
Bra020540.1-P	Field mustard	cytosol	23.77	29.1
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	26.5	27.71
Bra039646.1-P	Field mustard	plastid	32.51	26.86
Bra036573.1-P	Field mustard	extracellular	25.41	26.57
Bra020541.1-P	Field mustard	extracellular	25.14	26.21
Bra036572.1-P	Field mustard	extracellular	24.59	26.16
Bra037358.1-P	Field mustard	cytosol	19.4	24.65
Bra037411.1-P	Field mustard	mitochondrion	18.85	24.13
Bra022923.1-P	Field mustard	cytosol	19.4	23.2
Bra003836.1-P	Field mustard	extracellular, golgi	13.11	21.15
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	12.3	20.93
Bra005554.1-P	Field mustard	cytosol	17.21	20.45
Bra001787.1-P	Field mustard	endoplasmic reticulum	40.71	16.02

Protein Annotations

EnsemblPlants:Bra004405.1	EnsemblPlants:Bra004405.1-P	EnsemblPlantsGene:Bra004405	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI00025418A7
UniProt:M4CJM1	MapMan:35.2	:	:	:	:

Description

AT3G22080 (E=3e-112) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA07:-:18479132..18480797

Molecular Weight (calculated)

42115.2 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.224

Length

366 amino acids

Sequence
(BLAST)

001: MGSSSALAST IVKNWREHPP SSYSLKVHNF SQLEKSTTVS DDKYQSRPFS SGGYNWRLIV YPKGNEKDDG SGFISMYVEI DSKITTEVFA ELRFFVYNKK
101: ENKYFTIQDL EVRRFNALKT VWGLQQFLPL DTFNDLKNGY IFEGGHCEFG VDVIVASPLT NWEILSFDEK LSKPKFSWAV RKFSDLNVNN LTSDIFSMGG
201: RKWVLRLYPK GDAIADGKWL SIYLEMAPSD TLKEDEKIFV QANLRVLDPL GSNHIQLQMN VWFEVQNASW GWYNFMSLAE LRKTYLDNKE HAVNVEIEFE
301: VVSATNYSPI MKLTFVVCGT QKLHKYNIPI YIPQLFNYFE QHVPLTINLA WNGVTSLIVS PTMIVG

Best Arabidopsis Sequence Match ( AT3G22080.1 )
(BLAST)

001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI

Arabidopsis Description

Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.