Factsheet for Bra009895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
Bra009894.1-P	Field mustard	cytosol	66.86	91.76
Bra036573.1-P	Field mustard	extracellular	87.43	87.43
Bra020541.1-P	Field mustard	extracellular	86.0	85.75
Bra020540.1-P	Field mustard	cytosol	70.29	82.27
AT5G26320.1	Thale cress	vacuole	72.29	71.88
Bra036572.1-P	Field mustard	extracellular	70.0	71.22
Bra001785.1-P	Field mustard	nucleus	26.29	32.62
Bra001660.1-P	Field mustard	cytosol	25.71	31.36
Bra040903.1-P	Field mustard	extracellular, vacuole	33.71	30.89
Bra040904.1-P	Field mustard	extracellular, vacuole	32.86	30.1
KRH68153	Soybean	cytosol	26.57	29.81
Bra000640.1-P	Field mustard	cytosol	27.14	29.69
Bra007873.1-P	Field mustard	cytosol	26.57	29.52
Bra001786.1-P	Field mustard	extracellular, golgi	30.86	27.07
Bra035787.1-P	Field mustard	vacuole	31.14	26.98
Bra003989.1-P	Field mustard	plastid	22.29	26.9
Bra023852.1-P	Field mustard	cytosol	24.57	26.88
Bra003837.1-P	Field mustard	cytosol	25.71	26.71
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	27.14	26.61
Bra004405.1-P	Field mustard	plastid	27.71	26.5
Bra037411.1-P	Field mustard	mitochondrion	21.43	26.22
Bra031322.1-P	Field mustard	cytosol, plastid	22.86	25.81
Bra005554.1-P	Field mustard	cytosol	22.29	25.32
Bra022923.1-P	Field mustard	cytosol	22.0	25.16
Bra003990.1-P	Field mustard	plastid	20.86	24.33
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	25.43	23.3
Bra037358.1-P	Field mustard	cytosol	18.57	22.57
Bra034175.1-P	Field mustard	cytosol, plastid	20.86	21.86
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.14	21.4
Bra003836.1-P	Field mustard	extracellular, golgi	13.14	20.26
Bra007874.1-P	Field mustard	cytosol	23.14	20.25
Bra039646.1-P	Field mustard	plastid	22.29	17.61
Bra001787.1-P	Field mustard	endoplasmic reticulum	33.14	12.47

Protein Annotations

EnsemblPlants:Bra009895.1	EnsemblPlants:Bra009895.1-P	EnsemblPlantsGene:Bra009895	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF214	PFAM:PF00917	PFscan:PS50144	SignalP:SignalP-noTM	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI000253F3CA	UniProt:M4D097	MapMan:35.2	:	:	:

Description

AT5G26280 (E=4e-168) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA06:+:17954640..17956344

Molecular Weight (calculated)

39519.1 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.266

Length

350 amino acids

Sequence
(BLAST)

001: MDSQKMSLGF LSLAFLFITC SSAEFLIQQV TEGRGTENNS SYNLQANLGV TRVLREERPS SKIVTIAGYS VIKERTEVYE SSVFEAAGYK WRLVMYMNGN
101: KNDGGNGYIS LYVRMEETES LPYGWEVNVD LKLFVHNPKQ HKYLAVTDGA VKRFSAAKKE WGFGQLIALS TFQNANQGYI VQDTCSFGAE ILIVKPAEKQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVGDRY WRLGFNPKGD GDGRPHALPI YLYAQGFRPN AVATNTWGAV NLRLKNQRGS NHRQLYSAAW
301: YPIRSGYGVG VNNIILMKDL KDTSKGYLVN DAIVFEAEMV KVSVTNIVPV

Best Arabidopsis Sequence Match ( AT5G26280.1 )
(BLAST)

001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.