Factsheet for Bra003836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
cytosol 2
peroxisome 1
extracellular 4
plastid 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, nucleus, peroxisome, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	66.52	70.23
Bra003837.1-P	Field mustard	cytosol	65.64	44.21
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	68.28	40.58
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	61.67	35.35
Bra000640.1-P	Field mustard	cytosol	29.07	20.62
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	32.16	20.45
Bra040903.1-P	Field mustard	extracellular, vacuole	33.04	19.63
Bra040904.1-P	Field mustard	extracellular, vacuole	30.84	18.32
Bra001786.1-P	Field mustard	extracellular, golgi	32.16	18.3
Bra035787.1-P	Field mustard	vacuole	31.28	17.57
Bra007873.1-P	Field mustard	cytosol	24.23	17.46
KRH68153	Soybean	cytosol	22.03	16.03
Bra020540.1-P	Field mustard	cytosol	20.7	15.72
Bra001785.1-P	Field mustard	nucleus	18.94	15.25
Bra003990.1-P	Field mustard	plastid	19.82	15.0
Bra039646.1-P	Field mustard	plastid	28.19	14.45
Bra001660.1-P	Field mustard	cytosol	17.18	13.59
Bra031322.1-P	Field mustard	cytosol, plastid	18.5	13.55
Bra003989.1-P	Field mustard	plastid	17.18	13.45
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	20.26	13.14
Bra023852.1-P	Field mustard	cytosol	18.5	13.12
Bra004405.1-P	Field mustard	plastid	21.15	13.11
Bra036573.1-P	Field mustard	extracellular	19.82	12.86
Bra020541.1-P	Field mustard	extracellular	19.82	12.82
Bra036572.1-P	Field mustard	extracellular	19.38	12.79
Bra007874.1-P	Field mustard	cytosol	19.38	11.0
Bra009894.1-P	Field mustard	cytosol	12.33	10.98
Bra034175.1-P	Field mustard	cytosol, plastid	15.86	10.78
Bra037411.1-P	Field mustard	mitochondrion	12.33	9.79
Bra005554.1-P	Field mustard	cytosol	12.33	9.09
Bra022923.1-P	Field mustard	cytosol	11.89	8.82
Bra001787.1-P	Field mustard	endoplasmic reticulum	33.92	8.28
Bra037358.1-P	Field mustard	cytosol	10.13	7.99

Protein Annotations

EnsemblPlants:Bra003836.1	EnsemblPlants:Bra003836.1-P	EnsemblPlantsGene:Bra003836	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002083	InterPro:IPR008974
InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144
SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0002541723	UniProt:M4CI03	MapMan:35.2	:

Description

AT1G58270 (E=1e-062) ZW9 | ZW9

Coordinates

chrA07:+:15281504..15282984

Molecular Weight (calculated)

25946.7 Da

IEP (calculated)

4.827

GRAVY (calculated)

-0.230

Length

227 amino acids

Sequence
(BLAST)

001: MFTEEKKNTN YGTIFVYCFF CLVFIVEVVR FAKPYYNLQN LMETEAVLEE GLLDAGILPC NIRSSVSVPA RNHKKLSATI REETRTRPPV TYCVKFESFD
101: TMSKLVKDNG DKYESHPFSA GGYNWTFLVY PNADKPVGSG GYVSLYVKID NSSFIENQNE VYAWIRFLTY KSTTDTYHEF YVEGWPNAEQ NGWGVDKLIS
201: IADVQDPSKG FLVNDAIKVE VEIMAFT

Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)

001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST

Arabidopsis Description

ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.