Factsheet for Bra034175.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031322.1-P	Field mustard	cytosol, plastid	71.26	76.77
Bra007873.1-P	Field mustard	cytosol	47.01	49.84
Bra003989.1-P	Field mustard	plastid	38.32	44.14
AT3G22085.1	Thale cress	cytosol	38.32	43.99
Bra003990.1-P	Field mustard	plastid	37.72	42.0
Bra023852.1-P	Field mustard	cytosol	40.12	41.88
Bra004405.1-P	Field mustard	plastid	44.01	40.16
Bra001785.1-P	Field mustard	nucleus	29.94	35.46
Bra000640.1-P	Field mustard	cytosol	32.04	33.44
Bra007874.1-P	Field mustard	cytosol	36.83	30.75
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	30.54	28.57
Bra040904.1-P	Field mustard	extracellular, vacuole	32.63	28.53
Bra001660.1-P	Field mustard	cytosol	24.25	28.22
Bra040903.1-P	Field mustard	extracellular, vacuole	31.74	27.75
KRH68153	Soybean	cytosol	25.15	26.92
Bra001786.1-P	Field mustard	extracellular, golgi	31.74	26.57
Bra035787.1-P	Field mustard	vacuole	31.74	26.24
Bra009894.1-P	Field mustard	cytosol	18.56	24.31
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	26.95	23.56
Bra003837.1-P	Field mustard	cytosol	23.65	23.44
Bra020540.1-P	Field mustard	cytosol	19.76	22.07
Bra036573.1-P	Field mustard	extracellular	22.75	21.71
Bra020541.1-P	Field mustard	extracellular	22.75	21.65
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	21.86	20.86
Bra039646.1-P	Field mustard	plastid	27.54	20.77
Bra036572.1-P	Field mustard	extracellular	21.26	20.64
Bra037411.1-P	Field mustard	mitochondrion	16.47	19.23
Bra005554.1-P	Field mustard	cytosol	15.87	17.21
Bra037358.1-P	Field mustard	cytosol	14.67	17.01
Bra022923.1-P	Field mustard	cytosol	15.57	16.99
Bra003836.1-P	Field mustard	extracellular, golgi	10.78	15.86
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	9.88	15.35
Bra001787.1-P	Field mustard	endoplasmic reticulum	35.03	12.58

Protein Annotations

EnsemblPlants:Bra034175.1	EnsemblPlants:Bra034175.1-P	EnsemblPlantsGene:Bra034175	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SEG:seg	SUPFAM:SSF49599	UniParc:UPI0002543BFB
UniProt:M4EZD2	MapMan:35.2	:	:	:	:

Description

AT3G22080 (E=8e-078) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA01:+:27067930..27071096

Molecular Weight (calculated)

38416.5 Da

IEP (calculated)

6.000

GRAVY (calculated)

-0.463

Length

334 amino acids

Sequence
(BLAST)

001: MSKTEKLWVV SDTTITSKFG HRPPSTYSMK IQSLSQLKTL FSGTDGYKSR TFSSGKYNWK LVVYPEGNEK DNGTGFVSMY VELDSESASS TILAYLTFFI
101: YNKKENKYFT IQDNEEKQFN ALRLVHGFPQ VLPLDTFNDP KNGYVFDGDD QCEFGVDVMV PLTNWEVVSI TQEYSNTKFC WTLNEFSELK EHCYVSSKML
201: VGGRNWVLKL YPKGLNATYS AWLSLFLHLA DDETMKTGEE TYVQCDMRIL DPFGCDHLTK NLNQRCSNST PNLGWHNFVL LANFEKVYLD KLEKQLRVQV
301: PDLPHHVPHD VVLPPQLPRH RVDEDGPYAD GLKM

Best Arabidopsis Sequence Match ( AT2G15710.1 )
(BLAST)

001: MMCHGRKVKM RDNEMSQIRQ SLIPTGTEVS AGDGERRRCK TPEGQREKVV SDNDFVEEDC VLSKGGELLF GFDITQLLGQ QNWQGDSTIV NNLREHPPSS
101: YSLKINKLSQ LTFDKYESHR FLSGGYNWRL VIYPKGNEKD KGSGFISMYV EFDNTKVSST SPMEVFAYII FFVYNKKENK YFTIQDVEVK RFNALRTVWG
201: LSQVLSLETF NDLENGYTFE GEQCEFGVDV MVASPITKWE VVSFDEKLDI LKFSWSVKDF SVLKEEFYVS ERFSMGGRLW DLQMYPKGDP RRDKKWLSIF
301: LRLSGSETLT VDEKIYVIAH LRVLDPLGNW FRDRNKGWGY LEFLSFSKLR KSYLDLEDTF FPLNL

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.