Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G69650.1 | Thale cress | plastid | 51.2 | 50.68 |
| AT1G69660.1 | Thale cress | cytosol | 39.86 | 50.22 |
| Bra031322.1-P | Field mustard | cytosol, plastid | 51.55 | 48.39 |
| CDY57407 | Canola | cytosol | 51.2 | 48.06 |
| AT3G22080.1 | Thale cress | mitochondrion | 51.55 | 47.77 |
| AT2G15710.1 | Thale cress | cytosol | 53.26 | 42.47 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 41.92 | 41.22 |
| AT1G65370.1 | Thale cress | cytosol | 31.27 | 40.09 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 21.65 | 38.89 |
| Bra034175.1-P | Field mustard | cytosol, plastid | 43.99 | 38.32 |
| AT3G46190.2 | Thale cress | cytosol | 33.33 | 31.19 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 37.46 | 30.03 |
| AT3G28220.1 | Thale cress | cytosol | 36.77 | 28.92 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 37.46 | 28.76 |
| AT4G09770.4 | Thale cress | cytosol | 29.9 | 26.93 |
| CDY37377 | Canola | cytosol, plastid | 44.33 | 26.33 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 35.74 | 26.26 |
| KRH68153 | Soybean | cytosol | 27.84 | 25.96 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 32.99 | 25.6 |
| AT5G26290.1 | Thale cress | extracellular | 28.87 | 25.0 |
| AT3G17380.1 | Thale cress | cytosol | 26.46 | 24.92 |
| AT5G26260.1 | Thale cress | extracellular | 29.55 | 24.5 |
| AT5G26300.1 | Thale cress | extracellular | 28.87 | 24.07 |
| AT4G00780.1 | Thale cress | cytosol | 24.4 | 23.75 |
| AT5G26280.3 | Thale cress | plastid | 29.55 | 23.31 |
| AT5G26320.1 | Thale cress | vacuole | 28.18 | 23.3 |
| AT2G04190.1 | Thale cress | cytosol | 30.58 | 21.65 |
| AT2G04170.1 | Thale cress | mitochondrion | 29.9 | 20.71 |
| AT4G01390.1 | Thale cress | cytosol | 21.31 | 20.67 |
| AT2G32880.1 | Thale cress | cytosol | 21.65 | 19.81 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 28.18 | 19.2 |
| AT2G32870.1 | Thale cress | cytosol | 21.65 | 15.14 |
Protein Annotations
| Gene3D:2.60.210.10 | EntrezGene:28719300 | MapMan:35.2 | UniProt:A0A1I9LT92 | ProteinID:ANM65800.1 | ArrayExpress:AT3G22085 |
| EnsemblPlantsGene:AT3G22085 | EnsemblPlants:AT3G22085.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_001327745.1 |
| PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 | SUPFAM:SSF49599 |
| InterPro:TRAF-like | UniParc:UPI000849222F | SEG:seg | : | : | : |
Description
TRAF family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT92]
Coordinates
chr3:-:7780126..7781718
Molecular Weight (calculated)
33221.2 Da
IEP (calculated)
7.549
GRAVY (calculated)
-0.395
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTVLDANP STLREHPPSS YSIKFENIAE LDDGKYESSL FAAGGYNWRL VIYPKGNAKD EGSGFISMYV EIDSTNLLSS PLTGVFAYLV FFVYNKKTDK
101: YFTIKDSELK RFNAFRTVWG LSQGDQCEFG VDVLVAPSLT KWEVVSFNQK ILDPKFSWSL KKFKELKEEL YNSDKFLVGG RQWFLKVHPK GVKARDNSLS
201: IYVYLSESET LNAEEKIYTR VHLRVLDPFG SIHQAGQCNF WRTNTNKNQG YGWPTFASLD KVREKYLDNE GSLNIEIEFA VVSSTKYSPV N
101: YFTIKDSELK RFNAFRTVWG LSQGDQCEFG VDVLVAPSLT KWEVVSFNQK ILDPKFSWSL KKFKELKEEL YNSDKFLVGG RQWFLKVHPK GVKARDNSLS
201: IYVYLSESET LNAEEKIYTR VHLRVLDPFG SIHQAGQCNF WRTNTNKNQG YGWPTFASLD KVREKYLDNE GSLNIEIEFA VVSSTKYSPV N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.