Factsheet for AT5G26300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G26280.3	Thale cress	plastid	85.1	80.49
AT5G26260.1	Thale cress	extracellular	77.65	77.21
AT5G26320.1	Thale cress	vacuole	70.77	70.17
AT5G26290.1	Thale cress	extracellular	65.62	68.15
AT2G04170.1	Thale cress	mitochondrion	68.48	56.9
AT2G04190.1	Thale cress	cytosol	60.46	51.34
AT4G09770.4	Thale cress	cytosol	36.1	39.01
AT4G09780.1	Thale cress	endoplasmic reticulum, golgi	38.11	31.15
AT3G22080.1	Thale cress	mitochondrion	26.36	29.3
AT3G22085.1	Thale cress	cytosol	24.07	28.87
AT3G17380.1	Thale cress	cytosol	25.5	28.8
KRH68153	Soybean	cytosol	25.5	28.53
AT1G65050.1	Thale cress	cytosol, mitochondrion	12.89	27.78
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	28.37	27.27
AT3G20370.1	Thale cress	extracellular, plasma membrane	28.94	26.65
AT3G20380.1	Thale cress	extracellular, vacuole	27.51	25.6
AT1G65370.1	Thale cress	cytosol	16.33	25.11
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	21.2	25.0
AT1G69650.1	Thale cress	plastid	20.63	24.49
AT3G46190.2	Thale cress	cytosol	21.78	24.44
AT3G28220.1	Thale cress	cytosol	25.21	23.78
AT4G00780.1	Thale cress	cytosol	20.34	23.75
AT4G01390.1	Thale cress	cytosol	20.34	23.67
AT2G15710.1	Thale cress	cytosol	24.07	23.01
AT1G69660.1	Thale cress	cytosol	15.19	22.94
AT2G32880.1	Thale cress	cytosol	20.34	22.33
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	22.92	20.2
AT2G32870.1	Thale cress	cytosol	21.2	17.79

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EntrezGene:832699	ProteinID:AED93549.1	ArrayExpress:AT5G26300	EnsemblPlantsGene:AT5G26300
RefSeq:AT5G26300	TAIR:AT5G26300	RefSeq:AT5G26300-TAIR-G	EnsemblPlants:AT5G26300.1	TAIR:AT5G26300.1	UniProt:F4JZS5
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0031225
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	RefSeq:NP_198002.1	PFAM:PF00917	PFscan:PS50144
PANTHER:PTHR26379	PANTHER:PTHR26379:SF214	SMART:SM00061	SUPFAM:SSF49599	SignalP:SignalP-noTM	InterPro:TRAF-like
UniParc:UPI00001625C2	:	:	:	:	:

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JZS5]

Coordinates

chr5:+:9229326..9231180

Molecular Weight (calculated)

39392.6 Da

IEP (calculated)

7.158

GRAVY (calculated)

-0.203

Length

349 amino acids

Sequence
(BLAST)

001: MDDQKWSLVF ICLALLFTTS SSAEFLIQQV TGGRGAEYNS SYSLKENFGG TRVLRDERPS SKILTITNFS VIKGRVEPYE SSVFEAAGYK WRLVLYVNGN
101: PNDSGNDHIS LYVRIEETEY LPRGWEVNVD LKLFIHNGKL NKYLAISDGT LKLYNDAKRE WGFGQLIPHV TFYNTYGYIE QDIGSFGAEI FIVKPAQQQE
201: KVTFISNPPT NVFTWKILHF SILEDKFYYS DDFLVEDRYW RLGFNPKGDG GGRPYALPIF LFAQGHKANA VATNTWGAAN LRLKNQRSTN HRQIYTAAWY
301: PIGSGYGVGV NNIILLADLN DASQGYLVNN AIIFEAAMVK VSVTNIVSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.