Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 43.58 | 79.63 |
| AT1G65370.1 | Thale cress | cytosol | 50.0 | 65.2 |
| AT1G69660.1 | Thale cress | cytosol | 32.77 | 41.99 |
| AT3G22085.1 | Thale cress | cytosol | 41.22 | 41.92 |
| AT3G22080.1 | Thale cress | mitochondrion | 44.26 | 41.72 |
| AT1G69650.1 | Thale cress | plastid | 39.86 | 40.14 |
| Bra023852.1-P | Field mustard | cytosol | 40.2 | 37.19 |
| CDY39500 | Canola | cytosol | 39.86 | 36.88 |
| AT2G15710.1 | Thale cress | cytosol | 41.89 | 33.97 |
| CDY19307 | Canola | cytosol | 40.2 | 30.67 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 34.12 | 26.65 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 31.76 | 25.9 |
| AT3G17380.1 | Thale cress | cytosol | 26.35 | 25.24 |
| KRH68153 | Soybean | cytosol | 25.68 | 24.36 |
| AT3G28220.1 | Thale cress | cytosol | 30.41 | 24.32 |
| AT5G26290.1 | Thale cress | extracellular | 27.03 | 23.81 |
| AT3G46190.2 | Thale cress | cytosol | 25.0 | 23.79 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 29.39 | 23.2 |
| AT5G26320.1 | Thale cress | vacuole | 27.03 | 22.73 |
| AT4G09770.4 | Thale cress | cytosol | 24.66 | 22.6 |
| AT5G26260.1 | Thale cress | extracellular | 26.69 | 22.51 |
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 29.05 | 21.72 |
| AT5G26280.3 | Thale cress | plastid | 26.69 | 21.41 |
| AT5G26300.1 | Thale cress | extracellular | 25.0 | 21.2 |
| AT4G00780.1 | Thale cress | cytosol | 19.93 | 19.73 |
| AT4G01390.1 | Thale cress | cytosol | 18.58 | 18.33 |
| AT2G04190.1 | Thale cress | cytosol | 25.0 | 18.0 |
| AT2G04170.1 | Thale cress | mitochondrion | 25.34 | 17.86 |
| AT2G32880.1 | Thale cress | cytosol | 18.58 | 17.3 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 23.99 | 16.63 |
| AT2G32870.1 | Thale cress | cytosol | 18.58 | 13.22 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:842822 | UniProt:A0A178WJD9 | ProteinID:AAD26871.1 | ProteinID:AEE34337.1 |
| ProteinID:AEE34338.1 | ArrayExpress:AT1G65150 | EnsemblPlantsGene:AT1G65150 | RefSeq:AT1G65150 | TAIR:AT1G65150 | RefSeq:AT1G65150-TAIR-G |
| EnsemblPlants:AT1G65150.2 | TAIR:AT1G65150.2 | EMBL:AY128307 | Unigene:At.35916 | EMBL:BT001166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_176694.1 |
| RefSeq:NP_974092.1 | ProteinID:OAP18224.1 | PFAM:PF00917 | PO:PO:0000293 | PFscan:PS50144 | PANTHER:PTHR26379 |
| PANTHER:PTHR26379:SF213 | UniProt:Q9S9J5 | SMART:SM00061 | SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI00000AC367 |
Description
T23K8.6 [Source:UniProtKB/TrEMBL;Acc:Q9S9J5]
Coordinates
chr1:-:24203841..24205830
Molecular Weight (calculated)
33585.6 Da
IEP (calculated)
6.440
GRAVY (calculated)
-0.469
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNASDPAV LKTWRRNPPS STLVRLSQLA NEKYESPPFS SGAHNWRLVV HPKGNEADNG SGFVSMYVEC LSSTTPPIDV FAYLTFFVFS EEEKKYLSFQ
101: DVEVKRFNSS KTVWGLSKAL PVETLKDRAK GFILYGEEHE FGAHVKIVSR PASFGEDLPF HKFSWTIRDF ALLEQNDYVS KTFHMGEKDW TLKLYPKGDS
201: EADDKLIQHL HLADGETLAK GELIFVRVNL KVLDPRGSNH LTGSLNCWLM NSNKAWGLPQ SMSFDKNEGA YLDREGTLEV EIECEIKNSH KNHPFF
101: DVEVKRFNSS KTVWGLSKAL PVETLKDRAK GFILYGEEHE FGAHVKIVSR PASFGEDLPF HKFSWTIRDF ALLEQNDYVS KTFHMGEKDW TLKLYPKGDS
201: EADDKLIQHL HLADGETLAK GELIFVRVNL KVLDPRGSNH LTGSLNCWLM NSNKAWGLPQ SMSFDKNEGA YLDREGTLEV EIECEIKNSH KNHPFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.